What is the actual problem?
bash pipeline_wrapper
(see for example: /sdf/data/fermi/n/u41/L1/logs/DEV/AAA-testVerifyS3df-no-wrap/5.9/verify/000/slurm_pilot)<job executable="${preamble} ${container_wrap} python --version" batchOptions="${extra}" />
(as in Brian's example), the pipeline interface defined in pipeline_wrapper
is NOT available inside the container.pipelineSet
, and this fails (full log here, error at line 180):which: no pipelineSet in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)