Content
2015-04-08 Quick start, calibration, detector alignment, peak finder, scripts
2015-05-04 Angles phi and beta, fraser transformation
2015-08-19 Analysis with new peakfinder
2015-10-20 Indexing
2015-11-06 Geometry re-alignment
2015-12-01 Indexing after fraser transformation with β=0
2016-02-02 Cross-checks: Lattice and look up table
2016-03-25 Masks, Background subtraction
2016-04-05 Test of Peak Finders
2016-04-25 Test of Peak Finders - V2
2016-05-03 Test of Peak Finders - V3
2016-04-29 Fit functions and quality
2016-04-29 Phi-beta fit results in ARC and EQU
2016-05-13 Indexing results
2017-02-28 Revision of Analysis
References
- Calibration Management Tool
- Detector alignment tool
- CSPAD Alignment
- Meng's spreadsheet to the runs taken
- Meng's link for the CFEL confluence that has the data analysis summary
- Meng's amyloid_math1.pdf
- Direct mapping of fiber diffraction patterns into reciprocal space, Norbert Stribeck* and Ulrich Nochel (download)
- Preprocessing averaged XFEL data from adenovirus peptide amyloid and derivation of specimen characteristics, David Wojtas and Rick Millane
- Polanyi(1921).Z.Phys.7.pdf
- fiber-diffraction-formalism.pdf - my note
- J.Biol.Chem-2005-v280-N4-2481-Papanikolopoulou.pdf
- Nature-1999-v401-935-Raaij.pdf
- class ImgAlgos.PyAlgos - collection of n-d array processing algorithms
- class Detector.PyDetector - direct access to detector data and calibration n-d arrays
- 2015-10-13-meng-indexing1.pdf , 2015-10-13-meng-lineout_from_169_a.txt- Meng's calculations for indexing
- pyimgalgos (source)
- FiberIndexing.py (source)
- FiberAngles.py (source)
- TDFileContainer.py (source), TDFileContainer (auto-doc)
- Scattering and diffraction
Overview
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