Content
2015-04-08
Quick start, calibration, detector alignment, peak finder, scripts
2015-05-04
Angles phi and beta, fraser transformation
2015-08-19
Analysis with new peakfinder
2015-10-20
Indexing
2015-11-06
Geometry re-alignment
2015-12-01
Indexing after fraser transformation with β=0
2016-02-02
Cross-checks: Lattice and look up table
2016-03-25
Masks, Background subtraction
2016-04-05
Test of Peak Finders
2016-04-25
Test of Peak Finders - V2
2016-05-03
Test of Peak Finders - V3
2016-04-29
Fit functions and quality
2016-04-29
Phi-beta fit results in ARC and EQU
2016-05-13
Indexing results
2017-02-28
Revision of Analysis
References
Calibration Management Tool
Detector alignment tool
CSPAD Alignment
Meng's
spreadsheet
to the runs taken
Meng's
link for the CFEL confluence
that has the data analysis summary
Meng's
amyloid_math1.pdf
Direct mapping of fiber diffraction patterns into reciprocal space, Norbert Stribeck* and Ulrich Nochel
(
download
)
Preprocessing averaged XFEL data from adenovirus peptide amyloid and derivation of specimen characteristics,
David Wojtas and Rick Millane
Polanyi(1921).Z.Phys.7.pdf
fiber-diffraction-formalism.pdf
- my note
J.Biol.Chem-2005-v280-N4-2481-Papanikolopoulou.pdf
Nature-1999-v401-935-Raaij.pdf
class ImgAlgos.PyAlgos
- collection of n-d array processing algorithms
class Detector.PyDetector
- direct access to detector data and calibration n-d arrays
2015-10-13-meng-indexing1.pdf
,
2015-10-13-meng-lineout_from_169_a.txt
- Meng's calculations for indexing
pyimgalgos
(source)
FiberIndexing.py
(source)
FiberAngles.py
(source)
TDFileContainer.py
(source),
TDFileContainer
(auto-doc)
Scattering and diffraction