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Back to: CSPAD Alignment
Optical measurements
Comments from Gabriel Blaj:
The new CSPAD CXI Camera2 metrology is attached. This is the former CXI DS2 camera, with previous metrology file in DS2-Metrology-Aug-27-2014.xlsx (sent previously). As discussed previously, the camera is now named the CXI Camera2_V16_20150120, with new metrology in the attached file. The only quad that is changed is quad 3 (counting from 0 to 3). I will forward the new naming formula once again.
Metrology files:
2015-01-20-CSPAD-CXI-Camera2-Metrology.xlsx
No correction for X-Y, Z-data for Q1 is discarded
Quality check in X-Y plane
segm: S1 S2 dS1 dS2 L1 L2 dL1 dL2 angle(deg) D1 D2 dD d(dS) d(dL)
Quad 0
segm: 0 -20937 -20905 101 133 43556 43544 59 47 0.15393 48311 48317 -6 -32 12
segm: 1 -20911 -20905 65 71 43571 43551 31 11 0.08944 48308 48329 -21 -6 20
segm: 2 -20927 -20910 51 68 -43542 -43548 -17 -23 0.07829 48301 48316 -15 -17 6
segm: 3 -20931 -20916 31 46 -43587 -43591 3 -1 0.05061 48333 48368 -35 -15 4
segm: 4 20943 20946 55 58 -43546 -43544 27 29 -0.07434 48319 48320 -1 -3 -2
segm: 5 20916 20903 138 125 -43558 -43543 58 73 -0.17300 48308 48312 -4 13 -15
segm: 6 -20948 -20942 -58 -52 -43574 -43510 -34 30 -0.07237 48343 48292 51 -6 -64
segm: 7 -20915 -20941 2 -24 -43571 -43550 6 27 -0.01447 48316 48337 -21 26 -21
Quad 1
segm: 0 -20932 -20954 -138 -160 43566 43569 -61 -58 -0.19595 48351 48329 22 22 -3
segm: 1 -20948 -20950 46 44 43558 43548 26 16 0.05920 48328 48330 -2 2 10
segm: 2 -20930 -20927 64 67 -43572 -43542 -54 -24 0.08616 48332 48317 15 -3 -30
segm: 3 -20951 -20912 95 134 -43592 -43547 -97 -52 0.15057 48354 48319 35 -39 -45
segm: 4 20882 20956 -74 0 -43558 -43549 -46 -37 0.04867 48338 48296 42 -74 -9
segm: 5 20926 20925 -51 -52 -43552 -43577 -2 -27 0.06773 48320 48339 -19 1 25
segm: 6 -20924 -20921 91 94 -43563 -43566 -42 -45 0.12166 48327 48329 -2 -3 3
segm: 7 -20940 -20912 -95 -67 -43563 -43547 29 45 -0.10655 48323 48319 4 -28 -16
Quad 2
segm: 0 -20944 -20953 91 82 43586 43585 40 39 0.11371 48356 48360 -4 9 1
segm: 1 -20973 -20937 -121 -85 43574 43547 -53 -80 -0.13548 48323 48354 -31 -36 27
segm: 2 -20911 -20953 10 -32 -43566 -43572 -7 -13 -0.01447 48350 48322 28 42 6
segm: 3 -20908 -20909 -52 -53 -43544 -43546 27 25 -0.06908 48303 48305 -2 1 2
segm: 4 20947 20911 58 22 -43547 -43547 9 9 -0.05263 48324 48306 18 36 0
segm: 5 20917 20911 -86 -92 -43548 -43554 -38 -44 0.11709 48310 48314 -4 6 6
segm: 6 -20908 -20907 66 67 -43545 -43572 -26 -53 0.08747 48323 48309 14 -1 27
segm: 7 -20913 -20909 -46 -42 -43483 -43480 23 26 -0.05798 48245 48251 -6 -4 -3
Quad 3
segm: 0 -21001 -20956 83 128 43541 43568 63 90 0.13878 48366 48320 46 -45 -27
segm: 1 -20906 -20904 0 2 43562 43543 19 0 0.00132 48318 48301 17 -2 19
segm: 2 -20932 -20909 -38 -15 -43544 -43576 22 -10 -0.03486 48329 48317 12 -23 32
segm: 3 -20934 -20904 -158 -128 -43550 -43552 63 61 -0.18813 48320 48308 12 -30 2
segm: 4 20912 20949 -69 -32 -43545 -43549 -44 -48 0.06644 48335 48297 38 -37 4
segm: 5 20938 20934 -157 -161 -43558 -43544 -87 -73 0.20918 48325 48319 6 4 -14
segm: 6 -20913 -20911 -150 -148 -43544 -43546 72 70 -0.19605 48306 48305 1 -2 2
segm: 7 -20921 -20918 -78 -75 -43541 -43552 39 28 -0.10065 48313 48307 6 -3 11
Quality check in Z
segm: SA LA XSize YSize dZS1 dZS2 dZL1 dZL2 dZSA dZLA ddZS ddZL dZX dZY angXZ(deg) angYZ(deg) dz3(um)
Quad 0
segm: 0 -20921 43550 43550 20921 0 0 0 0 0 0 0 0 0 0 0.00000 0.00000 0.000
segm: 1 -20908 43561 43561 20908 0 0 0 0 0 0 0 0 0 0 0.00000 0.00000 0.000
segm: 2 -20918 -43545 20918 43545 0 0 0 0 0 0 0 0 0 0 0.00000 0.00000 0.000
segm: 3 -20923 -43589 20923 43589 0 0 0 0 0 0 0 0 0 0 0.00000 0.00000 0.000
segm: 4 20944 -43545 43545 20944 0 0 0 0 0 0 0 0 0 0 0.00000 0.00000 0.000
segm: 5 20909 -43550 43550 20909 0 0 0 0 0 0 0 0 0 0 0.00000 0.00000 0.000
segm: 6 -20945 -43542 20945 43542 0 0 0 0 0 0 0 0 0 0 0.00000 0.00000 0.000
segm: 7 -20928 -43560 20928 43560 0 0 0 0 0 0 0 0 0 0 0.00000 0.00000 0.000
Quad 1
segm: 0 -20943 43567 43567 20943 -97 6 173 276 -45 224 -103 -103 224 -45 0.29458 -0.12311 103.079
segm: 1 -20949 43553 43553 20949 -37 -47 110 100 -42 105 10 10 105 -42 0.13813 -0.11487 -9.973
segm: 2 -20928 -43557 20928 43557 371 -7 417 39 182 228 378 378 182 228 0.49826 0.29991 377.974
segm: 3 -20931 -43569 20931 43569 -38 21 25 84 -8 54 -59 -59 -8 54 -0.02190 0.07101 -59.126
segm: 4 20919 -43553 43553 20919 33 189 -242 -86 111 -164 -156 -156 -164 111 -0.21575 0.30402 155.273
segm: 5 20925 -43564 43564 20925 37 24 -138 -151 30 -144 13 13 -144 30 -0.18939 0.08214 -12.920
segm: 6 -20922 -43564 20922 43564 314 -44 252 -106 135 73 358 358 135 73 0.36970 0.09601 357.997
segm: 7 -20926 -43555 20926 43555 -61 -21 -131 -91 -41 -111 -40 -40 -41 -111 -0.11226 -0.14602 -39.938
Quad 2
segm: 0 -20948 43585 43585 20948 0 0 0 0 0 0 0 0 0 0 0.00000 0.00000 0.000
segm: 1 -20955 43560 43560 20955 0 0 0 0 0 0 0 0 0 0 0.00000 0.00000 0.000
segm: 2 -20932 -43569 20932 43569 0 0 0 0 0 0 0 0 0 0 0.00000 0.00000 0.000
segm: 3 -20908 -43545 20908 43545 0 0 0 0 0 0 0 0 0 0 0.00000 0.00000 0.000
segm: 4 20929 -43547 43547 20929 0 0 0 0 0 0 0 0 0 0 0.00000 0.00000 0.000
segm: 5 20914 -43551 43551 20914 0 0 0 0 0 0 0 0 0 0 0.00000 0.00000 0.000
segm: 6 -20907 -43558 20907 43558 0 0 0 0 0 0 0 0 0 0 0.00000 0.00000 0.000
segm: 7 -20911 -43481 20911 43481 0 0 0 0 0 0 0 0 0 0 0.00000 0.00000 0.000
Quad 3
segm: 0 -20978 43554 43554 20978 76 -1 -48 -125 37 -86 77 77 -86 37 -0.11313 0.10106 -76.759
segm: 1 -20905 43552 43552 20905 -27 -21 -48 -42 -24 -45 -6 -6 -45 -24 -0.05920 -0.06578 5.979
segm: 2 -20920 -43560 20920 43560 22 25 -30 -27 23 -28 -3 -3 23 -28 0.06299 -0.03683 -3.047
segm: 3 -20919 -43551 20919 43551 26 5 -31 -52 15 -41 21 21 15 -41 0.04108 -0.05394 20.991
segm: 4 20930 -43547 43547 20930 63 239 -265 -89 151 -177 -176 -176 -177 151 -0.23288 0.41335 175.587
segm: 5 20936 -43551 43551 20936 56 59 -61 -58 57 -59 -3 -3 -59 57 -0.07762 0.15599 2.992
segm: 6 -20912 -43545 20912 43545 23 15 -68 -76 19 -72 8 8 19 -72 0.05206 -0.09474 7.995
segm: 7 -20919 -43546 20919 43546 7 -5 -48 -60 1 -54 12 12 1 -54 0.00274 -0.07105 11.986
Constants
geometry/0-end.data
# TITLE Geometry parameters of CSPAD
# DATE_TIME 2015-02-03 13:57:08 PST
# METROLOGY ./work/metrology.txt
# AUTHOR dubrovin
# EXPERIMENT CXI
# DETECTOR CSPAD
# CALIB_TYPE geometry
# COMMENT:01 Table contains the list of geometry parameters for alignment of 2x1 sensors, quads, CSPAD, etc
# COMMENT:02 All translation and rotation pars of the object are defined w.r.t. parent object Cartesian frame
# PARAM:01 PARENT - name and version of the parent object
# PARAM:02 PARENT_IND - index of the parent object
# PARAM:03 OBJECT - name and version of the object
# PARAM:04 OBJECT_IND - index of the new object
# PARAM:05 X0 - x-coordinate [um] of the object origin in the parent frame
# PARAM:06 Y0 - y-coordinate [um] of the object origin in the parent frame
# PARAM:07 Z0 - z-coordinate [um] of the object origin in the parent frame
# PARAM:08 ROT_Z - object design rotation angle [deg] around Z axis of the parent frame
# PARAM:09 ROT_Y - object design rotation angle [deg] around Y axis of the parent frame
# PARAM:10 ROT_X - object design rotation angle [deg] around X axis of the parent frame
# PARAM:11 TILT_Z - object tilt angle [deg] around Z axis of the parent frame
# PARAM:12 TILT_Y - object tilt angle [deg] around Y axis of the parent frame
# PARAM:13 TILT_X - object tilt angle [deg] around X axis of the parent frame
# HDR PARENT IND OBJECT IND X0[um] Y0[um] Z0[um] ROT-Z ROT-Y ROT-X TILT-Z TILT-Y TILT-X
QUAD:V1 0 SENS2X1:V1 0 21736 32910 0 0 0 0 0.15393 0.00000 0.00000
QUAD:V1 0 SENS2X1:V1 1 21764 10525 0 0 0 0 0.08944 0.00000 0.00000
QUAD:V1 0 SENS2X1:V1 2 33135 68357 0 270 0 0 0.07829 0.00000 0.00000
QUAD:V1 0 SENS2X1:V1 3 10548 68345 0 270 0 0 0.05061 0.00000 0.00000
QUAD:V1 0 SENS2X1:V1 4 68567 56864 0 180 0 0 -0.07434 0.00000 0.00000
QUAD:V1 0 SENS2X1:V1 5 68641 79593 0 180 0 0 -0.17300 0.00000 0.00000
QUAD:V1 0 SENS2X1:V1 6 77801 21584 0 270 0 0 -0.07237 0.00000 0.00000
QUAD:V1 0 SENS2X1:V1 7 54887 21619 0 270 0 0 -0.01447 0.00000 0.00000
QUAD:V1 1 SENS2X1:V1 0 21796 33393 69 0 0 0 -0.19595 0.29458 -0.12311
QUAD:V1 1 SENS2X1:V1 1 21763 10496 -53 0 0 0 0.05920 0.13813 -0.11487
QUAD:V1 1 SENS2X1:V1 2 33311 68498 -35 270 0 0 0.08616 0.49826 0.29991
QUAD:V1 1 SENS2X1:V1 3 10488 68326 12 270 0 0 0.15057 -0.02190 0.07101
QUAD:V1 1 SENS2X1:V1 4 68577 56906 30 180 0 0 0.04867 -0.21575 0.30402
QUAD:V1 1 SENS2X1:V1 5 68533 79420 54 180 0 0 0.06773 -0.18939 0.08214
QUAD:V1 1 SENS2X1:V1 6 77306 21384 -179 270 0 0 0.12166 0.36970 0.09601
QUAD:V1 1 SENS2X1:V1 7 54801 21366 33 270 0 0 -0.10655 -0.11226 -0.14602
QUAD:V1 2 SENS2X1:V1 0 21762 33294 0 0 0 0 0.11371 0.00000 0.00000
QUAD:V1 2 SENS2X1:V1 1 21805 10433 0 0 0 0 -0.13548 0.00000 0.00000
QUAD:V1 2 SENS2X1:V1 2 33267 68360 0 270 0 0 -0.01447 0.00000 0.00000
QUAD:V1 2 SENS2X1:V1 3 10584 68343 0 270 0 0 -0.06908 0.00000 0.00000
QUAD:V1 2 SENS2X1:V1 4 68488 57005 0 180 0 0 -0.05263 0.00000 0.00000
QUAD:V1 2 SENS2X1:V1 5 68432 79403 0 180 0 0 0.11709 0.00000 0.00000
QUAD:V1 2 SENS2X1:V1 6 77293 21711 0 270 0 0 0.08747 0.00000 0.00000
QUAD:V1 2 SENS2X1:V1 7 54717 21678 0 270 0 0 -0.05798 0.00000 0.00000
QUAD:V1 3 SENS2X1:V1 0 21671 32898 80 0 0 0 0.13878 -0.11313 0.10106
QUAD:V1 3 SENS2X1:V1 1 21763 10453 -46 0 0 0 0.00132 -0.05920 -0.06578
QUAD:V1 3 SENS2X1:V1 2 33039 68572 16 270 0 0 -0.03486 0.06299 -0.03683
QUAD:V1 3 SENS2X1:V1 3 10418 68557 12 270 0 0 -0.18813 0.04108 -0.05394
QUAD:V1 3 SENS2X1:V1 4 68343 57213 -10 180 0 0 0.06644 -0.23288 0.41335
QUAD:V1 3 SENS2X1:V1 5 68304 79806 80 180 0 0 0.20918 -0.07762 0.15599
QUAD:V1 3 SENS2X1:V1 6 77911 21808 44 270 0 0 -0.19605 0.05206 -0.09474
QUAD:V1 3 SENS2X1:V1 7 54550 21911 41 270 0 0 -0.10065 0.00274 -0.07105
CSPAD:V1 0 QUAD:V1 0 -4500 -4500 0 90 0 0 0.00000 0.00000 0.00000
CSPAD:V1 0 QUAD:V1 1 -4500 4500 0 0 0 0 0.00000 0.00000 0.00000
CSPAD:V1 0 QUAD:V1 2 4500 4500 0 270 0 0 0.00000 0.00000 0.00000
CSPAD:V1 0 QUAD:V1 3 4500 -4500 0 180 0 0 0.00000 0.00000 0.00000
RAIL 0 CSPAD:V1 0 0 0 1000000 0 0 0 0.00000 0.00000 0.00000
IP 0 RAIL 0 0 0 0 0 0 0 0.00000 0.00000 0.00000
geometry/1-end.data - with aligned quads:
CSPAD:V1 0 QUAD:V1 0 -4800 -3200 0 90.0 0.0 0.0 0.00000 0.00000 0.00000
CSPAD:V1 0 QUAD:V1 1 -3800 6200 0 0.0 0.0 0.0 0.00000 0.00000 0.00000
CSPAD:V1 0 QUAD:V1 2 5800 4900 0 270.0 0.0 0.0 0.00000 0.00000 0.00000
CSPAD:V1 0 QUAD:V1 3 3800 -4800 0 180.0 0.0 0.0 0.00000 0.00000 0.00000
/reg/g/psdm/detector/alignment/cspad/calib-cxi-ds2-2015-01-20/calib/CsPad::CalibV1/CxiDs2.0:Cspad.0/geometry/geo-cxi86415-r0002-swap-cabels.data - geometry file with swapped quad indexes for swapped cables for cxi86415, as requested by Jason
CSPAD:V1 0 QUAD:V1 0 -3800 6200 0 0.0 0.0 0.0 0.00000 0.00000 0.00000
CSPAD:V1 0 QUAD:V1 1 -4800 -3200 0 90.0 0.0 0.0 0.00000 0.00000 0.00000
CSPAD:V1 0 QUAD:V1 2 3800 -4800 0 180.0 0.0 0.0 0.00000 0.00000 0.00000
CSPAD:V1 0 QUAD:V1 3 5800 4900 0 270.0 0.0 0.0 0.00000 0.00000 0.00000
Quads alignment
2015-03-04 quad alignment for exp=cxig0715:run=23
Quads alignment is done on 2015-03-04 using new alignment tool with development name geo.
Chris/Sebastien Boutet: there should be lysozyme rings in cxig0715 runs 8,10,11,12,13,14,15.
Data from runs 13 and 23 (exp=cxig0715:run=23) is used to get cspad ndarray with maximal intensity values over 20K-40K events.
Images below show default and aligned version of the geometry file:
2015-05-01 quad alignment for exp=cxii2415:run=8
Chris supplied file /reg/g/psdm/detector/alignment/cspad/calib-cxi-camera2-2015-01-20/cspad-ndarr-max-cxii2415-r0008-lysozyme-rings.npy
Archived: /reg/g/psdm/detector/alignment/cspad/calib-cxi-camera2-2015-01-20/calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/geometry/geo-cxii2415-r0008-v1.data
Deployed: /reg/d/psdm/CXI/cxii2415/calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/geometry/1-end.data
2015-05-01 quad alignment for exp=cxii5615:run=24-36,38-42
ndarray with image: /reg/g/psdm/detector/alignment/cspad/calib-cxi-camera2-2015-01-20/cspad-ndarr-max-cxii5615-r24-42-protein.txt
starting version of geometry geo-cxii2415-r0008-v1.data
Archived: /reg/g/psdm/detector/alignment/cspad/calib-cxi-camera2-2015-01-20/calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/geometry/geo-cxii5615-r24-42-v1.data
Deployed: /reg/d/psdm/CXI/cxii5615/calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/geometry/1-end.data
2016-03-21 quad alignment for exp=cxih9615:run=48, 51, 65
- Data:
/reg/d/psdm/cxi/cxih9615/xtc/ exp=cxih9615:run=48 collected on 2016-06-26 13:13 - 19:18 - Restore xtc data files from tape runs 39, 48, 51, 65
- Optical metrology: 2015-01-20 CSPAD Camera2 Alignment
- Initial geometry:
calib-cxi-camera2-2015-01-20/geo-cxii5615-r24-42-v1.data - Geometry file saved:
/reg/g/psdm/detector/alignment/cspad/calib-cxi-camera2-2015-01-20/geo-cxih9615-r48-51-65-v1.data - Plots:
2016-03-21 quad alignment for exp=cxij4915:run=25, 26
- Data:
exp=cxij4915:run=25, 26 collected on 2015-10-29 19:07 - water ring Using Radial Background Subtraction Algorithm with initial geometry calib-cxi-camera2-2015-01-20/geo-cxii5615-r24-42-v1.data
apply correction of the detector position geo.move_geo('CSPAD:V1', 0, -2200, -600, 0) we get
Geometry file saved: /reg/g/psdm/detector/alignment/cspad/calib-cxi-camera2-2015-01-20/geo-cxij4915-r25-v1.data
Command for further tuning
geo -g geo-cxii5615-r24-42-v1.data -i cspad-ndarr-max-cxii5615-r24-42-protein.txt
OR:
geo -g geo-cxii2415-r0008-v1.data -i cspad-ndarr-max-cxii2415-r0008-lysozyme-rings.txt
OR for alignment cross-check:
geo -g geo-cxii2415-r0008-v1.data -i cspad-ndarr-max-cxii5615-r24-42-protein.txt
References
