Intro
Evolution of calibration system of LCLS creates new opportunities and increase complexity. Large number of detectors and scripts for calibration processing makes it hard to track down what is going on. This note is intended to collect in one spot references to location of all intermediate repositories and log files.
LCLS scripts
| script | record at start | repository | logs | control parameters | comments |
|---|---|---|---|---|---|
| area detectors | |||||
calibrun | /reg/g/psdm/logs/calibman/<year>/<month>/<time-stamp>-log-<login>-<job-id>.txt | N/A | CLI dark processing for generic detector | ||
| calibfile | /reg/g/psdm/logs/calibman/<year>/<month>/calibfile.txt | -l, --lfname | CLI for calib file deployment under .../<experiment>/calib/... | ||
| geometry_deploy_constants | /reg/g/psdm/logs/atstart/<year>/<year>_lcls1_geometry_deploy_constants.txt | /reg/g/psdm/detector/calib/geometry/ | <repository>/<dettype>/<dettype>_<full-lcls1-detector-name>_<time-stamp>.data | -o, --dirrepo | Geometry calibration constants deployment CLI |
| dcs | /reg/g/psdm/logs/atstart/<year>/<year>_lcls1_dcs.txt |
or parameter -c <path to local calib> e.g.: -c /reg/d/psdm/detector/calib # detector-dependent repo | run-time only | ||
deploy_constants for releases > ana-4.0.42 | /reg/g/psdm/logs/atstart/<year>/<year>_lcls1_deploy_constants.txt | /reg/g/psdm/detector/calib/constants/ | <repository>/logs/<YEAR>/<time-stamp>_log_deploy_constants_<uid>.txt | -o , --dirrepo | Deployment of default constants for all generic (one gain range) detectors |
| epix10ka | |||||
| epix10ka_offset_calibration | <repository>/logs/<year>_epix10ka_offset_calibration.txt for >ana-4.0.37: /cds/group/psdm/logs/atstart/<year>/<year>_lcls1_epix10ka_offset_calibration.txt | /reg/g/psdm/detector/gains/epix10k/panels/ | <repository>/logs/<year>/<time-stamp>_log_epix10ka_offset_calibration_<login>.txt ???? | -o, --dirrepo | Processing of the charge injection runs with 103 steps/calib-cycles |
| epix10ka_pedestals_calibration | <repository>/logs/<year>_epix10ka_pedestals_calibration.txt for >ana-4.0.37: /cds/group/psdm/logs/atstart/<year>/<year>_lcls1_epix10ka_offset_calibration.txt | /reg/g/psdm/detector/gains/epix10k/panels/ | <repository>/logs/<year>/<time-stamp>_log_epix10ka_pedestals_calibration_<login>.txt | -o, --dirrepo | Dark processing of runs with 5 steps/calib-cycles |
| epix10ka_deploy_constants | <repository>/logs/<year>_epix10ka_deploy_constants.txt for >ana-4.0.37: /cds/group/psdm/logs/atstart/<year>/<year>_lcls1_epix10ka_deploy_constants.txt | /reg/g/psdm/detector/gains/epix10k/panels/ | <repository>/logs/<year>/<time-stamp>_log_epix10ka_deploy_constants_<login>.txt | -o, --dirrepo | Merging and deployment ofper-panel constants. |
| Jungfrau | |||||
| jungfrau_dark_proc | <repository>/logs/<year>_log_jungfrau_dark_proc.txt for >ana-4.0.37: /cds/group/psdm/logs/atstart/<year>/<year>_lcls1_jungfrau_dark_proc.txt | /reg/g/psdm/detector/gains/jungfrau/panels/ contains per-panel constants | <repository>/logs/<year>/<time-stamp>_jungfrau_dark_proc_<login>.txt | -o, --dirrepo | replacement for jungfrau_ndarr_dark_proc intended for per-panel calibration constants. Dark processing of runs with 3 steps/calib-cycles |
| jungfrau_deploy_constants | <repository>/logs/<year>_log_jungfrau_deploy_constants.txt for >ana-4.0.37: /cds/group/psdm/logs/atstart/<year>/<year>_lcls1_jungfrau_deploy_constants.txt | /reg/g/psdm/detector/gains/jungfrau/panels/ | <repository>/logs/<year>/<time-stamp>_jungfrau_deploy_constants_<login>.txt | -o, --dirrepo | works after jungfrau_dark_proc to merge and deploy constants under .../<experiment>/calib/... |
| jungfrau_gain_constants | /reg/g/psdm/detector/gains/jungfrau/ - reference to dirs with gain constants for panel-ids /reg/g/psdm/detector/calib/jungfrau/ jungfrau-<panel-id>.h5 | /reg/g/psdm/logs/calibman/jungfrau_gain/<year>/<time-stamp>-<experiment>-<run>-<login>.txt | -R, --repdir | ||
DEPRECATED jungfrau_ndarr_dark_proc | /reg/g/psdm/logs/calibman/<year>/<month>/jungfrau_ndarr_dark_proc.txt - log record at start | Dark processing and deployment of calibration constants for etire detector. It was DEPRECATED due to new per-panel approach to calibration constants. Replaced by jungfrau_dark_proc and jungfrau_deploy_constants | |||
LCLS2 scripts
| script | record at start | repository | logs | control parameters | comments |
|---|---|---|---|---|---|
| Generic calibration manager | |||||
| calibman | /cds/group/psdm/logs/atstart/2022/2022_logrec_calibman.txt | /cds/group/psdm/logs/calibman/lcls2 | <repository>/<year>/<time-stamp>-<script-name>-<login>.txt e.g. /cds/group/psdm/logs/calibman/lcls2/2022/20220202T081010-calibman-dubrovin.txt | -L, --logdir | Interaction with MongoDB etc |
| epix10ka | |||||
| epix10ka_pedestals_calibration | /cds/group/psdm/logs/atstart/<year>/<year>_logrec_epix10ka_pedestals_calibration.txt DEPRECATED: <repository>/panels/logs/log_pedestals_calibration_<year>.txt | /cds/group/psdm/detector/gains2/epix10ka/panels/ | <repository>/logs/<year>/<time-stamp>_log_epix10ka_pedestals_calibration_<login>.txt e.g. /cds/group/psdm/detector/gains2/epix10ka/panels/logs/2022/2022-02-02T115201_log_epix10ka_pedestals_calibration_dubrovin.txt | -o, --dirrepo | |
| epix10ka_deploy_constants | /cds/group/psdm/logs/atstart/<year>/<year>_logrec_epix10ka_deploy_constants.txt e.g. /cds/group/psdm/logs/atstart/2022/2022_logrec_epix10ka_deploy_constants.txt DEPRECATED: <repository>/panels/logs/log_deploy_constants_<year>.txt | /cds/group/psdm/detector/gains2/epix10ka/panels/ | <repository>/logs/<year>/<time-stamp>_log_epix10ka_deploy_constants_<login>.txt e.g. /cds/group/psdm/detector/gains2/epix10ka/panels/logs/2022/2022-02-02T120758_log_epix10ka_deploy_constants_dubrovin.txt | -o, --dirrepo | |
| epix100, opal | |||||
det_dark_proc | /cds/group/psdm/logs/atstart/<year>/<year>_logrec_det_dark_proc.txt | /cds/group/psdm/detector/calib2/ | <repository>/<dettype>/logs/<year>/<time-stamp>_log_det_dark_proc_<login>.txt e.g. /cds/group/psdm/detector/calib2/epix100/logs/2022/2022-02-02T080749_log_det_dark_proc_dubrovin.txt | ||
Tentative logging for LCLS2
Q: is it ok to save logs in repo?
A: if repodir is changed path will be loss along with local location. It would be nice to have record at start in well known static directory. Each record points to the main log file etc.
Logging at start records
Is intended to keep all records at start for all scripts in a single place.
Root directory is intended to be hardwired, e.g.
/cds/group/psdm/logs/atstart/
Further path
/cds/group/psdm/logs/atstart/<year>/<year>-logrec-<script-name>.txt - single file per year per script.
Repository
Root directory
-o, --dirrepo
/cds/group/psdm/detector/gains2/<detector-type>/panels/
/cds/group/psdm/detector/gains2/<detector-type>/panels/<panel-id>,
where <detector-type> e.g. epix10ka
Logging files
/cds/group/psdm/detector/gains2/<detector-type>/panels/logs/<year>/<time-stamp>-<script-name>-<login>.txt
References
Overview
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