Content

To-do

2016-04-19 List of long-term perspective and on-going projects

This list is approved by Chris:

• detector calibration store
• moving algorithms in git/scikit-beam
• development of analysis-specific algorithms for FDA (Meng)
• pipeline image processing algorithms - background subtraction, peak-finders, dynamic masks, etc.
• detector correction algorithms - non-linear gain, common mode, etc.
• support and implementation of new ideas in the CalibManager package
• support and implementation of new ideas in the Detector package
• upgrade of the mask editor/image browser

2016-06-02

• pyimgalgos
  • update auto-doc
  • add HSpectrum, use old NDArrSpectrum as alias
  • add HPolar, use it as a super-class of RadialBackground
• new Gabriel's file metrology  processing for
  
  • cxi camera2 from 2016-05-25
  • mec quads0,1,2 from 2016-02-16
  • mec quads1 from 2016-04-21

2016-05-17

Detector

• Jason
  • retrieve size and shape from configStore
  • add methods xaxis, yaxis for image

Algorithms

• ImgAlgos - peakfinder
• Chris-peakfinder:
  • perhaps give a simple interface with fewer parameters to one of the peak finders?
  • consistent names for both phases of peak-finding (radius, r0)?

Calibman

• Optimization of the list of runs in the GUIDark
• Develop deployment pop-up GUI
• Phil - change behavior of the Deploy buttun (turn to Deployed)

Cross check for optical metrology

• Generate geometry for comparison with Oleksandr Yefanov <oleksandr.yefanov@desy.de> 
  Cross check of correction to optical metrology
• Check corrected geometry after Oleksandr processing

Meng's FDE

• cross-checks
  • indexing

Detector Calibration Store,  PSAS-148

• project description
• discussion with involved parties
• begin implementation

Done

2016-03-24 through 2016-05-18

ImgAlgos

• peak-finders revision 1
• significant update for v3r1, see Test of Peak Finders

Calibman

• fix interaction with mysql
• Update selector of experiments in the GroupFileManager
• fix issue with usage of environment variables
• Silke - in calibrun add -B -T options
• Add support for common mode parameters evaluation/deployment

Meng's FDE

• cross-checks
  
  • masks
  • peak selection parameters
  • compare peak list of Cheetah with peak-finder
• move new transformation to FiberAngles
• generate peak table in crystfel(?) format
• 2016-03-31 Meng - list of peaks with fit to beta and phi (w/o indexing)

Detector

• add mask of edge rows and columns
• add mask of bad pixel neighbors and unbond 4 or 8 pixels
• Chris & Zhou - add default geometry for Epix100a
• Chuck - add method converting image to n-d array
• Chris - revision of doc-string in AreaDetector

2016-02-11 through 2016-03-24

pyimgalgos PSAS-178 H-project as a 1-st candidate to sci-beam

improve HBins - add edgemode parameter HBins auto-doc

add RadialBkgd - low frequency background subtraction: Radial Background Subtraction Algorithm

develop uni-tests for HBins:

calibman PSAS-6

do not start on hosts where data is not seen

do not start under opr accounts

use switch between :xtc and :smd mode of the event reader

improve py-algorithm for ndarray averaging, command det_ndarr_raw_proc

command line for event_keys

 clean-up code, get rid of Frame

replace psana module-based scan

replace psana module-based averaging with Detector-based averaging

PSANA

in ImgAlgos/ImgSaveInFile save image in other formats: bin, tiff, etc...
pdscalibdata::NDArrIOV1 - I/O ndarray of any shape.

Detector PSAS-139

 add method for export numpy array in text form

 add method to load calibration text file similar to NDArrIO

 load variable size calibration

 add method center()

  Andor3d - support for variable size data in calibman and Detector

2014-06-27 Generic geometry parametrization

CalibManager.OpticAlignmentCspadV1.py - generates constants type "geometry" for CSPAD

pyimgalgos.GeometryObject.py, GeometryAccess.py- works with calibration constants type "geometry"

C++ version of GeometryObject, GeometryAccess

cspad_image_producer.py - use default calibration directory

PSCalib.CalibFileFinder.py - analog of C++ PSCalib::CalibFileFinder

generic image producer based on type "geometry"

 GUI-based tool for sensors' alignment using type "geometry"

CalibManager/app/calibrun - add option to use configuration parameters from file


CorAna

find the reason of the difference with Marcin's results

2013-06-05 Marcin apply LLD threshold = 200, in stead of 20.

fits to g2 function vs time

plot for fit parameters vs q

use processing for any camera