Scripts

Simulation and its processing scripts are in

cxif5315/sim*
e.g.:
sim00-README
sim01-make-quaternions.py
sim02-run-pattern-sim.py
sim03-plot-image-from-h5-file.py
sim04-proc-h5-files.py
sim05-run-peakfinder.py
sim06-filter-peaks.py
sim07-fit-peaks.py
sim08-indexing.py

sim-cell-fiber.cell
sim-det1500x1500.geom

File sim00-README explains how to use all scripts.

Filtered peaks after peakfinding

  • Orientation sample: x72-y3-z0-180
  • Script: sim06-filter-peaks.py
    • removes peak from beam direction
    • number of peaks in EQU > 1 ??? (fit would not work for single peak)

ARC peaks

 

 

EQU peaks

Fitting peaks and finding angles phi and beta

EQU

ARC l=+1

Image phi-rotation and fraser transformation

Run script: 

./sim08-indexing.py

./sim08-indexing.py --do_img_fraser

./sim08-indexing.py --do_img_fraser --do_img_phi

to get raw, phi-rotated, and fraser-transformed images

 

 

 

 

 

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