Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

Pipeline needs: Brian Van Klaveren 

  •  Add S3DF/S3DFDATA sites to DEV Pipeline, for L1 testing
  •  The PROD pipeline interface hangs when loading a task (example)
  •  Ability to delete tasks with runs from the pipeline admin (DEV and PROD)
  •  Can we pipe slurm_pilot into the standard logfile.txt for each task?
  •  Debugging DQM ingestion scripts#JAVA_HOME

SLURM questions:

  •  Document all SLURM options supported by the pipeline interface Brian Van Klaveren 
  •  What are all the available SLURM configurations (queue, memory, etc.) for S3DF? Yang, Wei 
  •  Do we need the analogous of a preempt queue in S3DF? What would that be? Richard Dubois 
    •  TBD: currently only roma and milano partitions available during the test period. Worst case is we reserve 1k cores for L1 when the time comes.

CVS is broken: Brian Van Klaveren Kelly (Arrighi), Heather Joanne Bogart 

Trying to create a branch in svac/L1Pipeline with cvs tag -b, however:

  • stag complains that my tag is not standard. But I’m not calling stag (L1Pipeline was never ported to SCons)
  • /afs/slac.stanford.edu/g/glast/applications/install/@sys/usr/bin/stag disappeared from path (see comment below)
  • stagging with -custom and -branch does not work (basically, stag won’t let me create a branch either)

Here are some options (porting the whole svac to git might be best for long-term support)

  • disentangle cvs from stag (no idea what that would look like, and why cvs is still attached to stag on s3df)
  • port svac to git, which honestly at this point would be my preferred option (no need to make it public tho)
      • Current setting: --account fermi:L1


    Data migration issues: Richard Dubois 

    •  SCons symlinks were not migrated correctly: /afs/slac/g/glast/applications/install/@sys/usr/bin/scons was not copied to /sdf
      •  RD: not sure the correct fix for the @sys, but it did get copied to /sdf/data/fermi/a/applications/SCons/2.1.0/bin/scons and can be used from there
      •  MEM: this is an acceptable workaround for now. But really we should get rid of this whole SCons nightmare
    •  stag is also broken: /afs/slac.stanford.edu/g/glast/applications/install/@sys/usr/bin/stag was not installed correctly on /sdf
      •  RD: stag is was linked to nfs and is here: /sdf/data/fermi/n/u05/stag/0.2.5/redhat6-x86_64-64bit/stag
      •  MEM: this is also broken (just try calling it). The only working path is the afs one, but only works from rhel6-64
    •  xrootd stuff is also broken. See for example the PROD, DEV folders in here: /sdf/group/fermi/a/applications/xrootd(Wilko Kroeger )
      •  MEM: this /sdf/group/fermi/a/applications/xrootd/dist/v3.1.1/i386_rhel60/bin/glast_wrapper.sh does not work (can't find fs)
         

    Container needs: Yang, Wei 

    •  Need a container where the architecture is set explicitly to rhel6 instead of centos6 (architecture name confuses SCons)
    •  While we are at it, can we add CVS and vim to the new container?

    Container quirks: Yang, Wei

    •  We need a fortran compiler as well, specifically g77 and f2py. From the Makefile of IGRF: G77 = /usr/bin/g77 and F2PY = f2py2.6
    •  Singularity gets confused by symlinks
    (example: /sdf/home/m/monzani/fermi-user vs /sdf/group/fermi/user/monzani). Is that the expected behavior? For now, workaround is --bind /sdf:/sdf
    • . Solution: more bind mounts. Script start_rhel6.sh just added to L1Proc for compilation

    The following sections are obsolete


    CVS is broken: Moved to git (completed on )

    • Documentation about stag (only works on rhel6-64). Documentation from Joanne on making branch tags with cvs
    • /afs/slac.stanford.edu/g/glast/applications/install/@sys/usr/bin/stag disappeared from path

    Plan forward: move everything to git → All done, as of  


    Container quirks: predictably, that went away on its own (checked  

    (ugly but workable

    )

    • Surreal behavior with folder names: only difference is in the last line
    Code Block
    languagepy
    titleThis code works:
    #!/sdf/group/fermi/a/isoc/flightOps/rhel6_gcc44/ISOC_PROD/bin/shisoc python2.6
    
    import os
    import sys
    
    L1Name = os.environ.get('L1_TASK_NAME') or "L1Proc"
    L1Version = os.environ.get('PIPELINE_TASKVERSION') or os.environ.get('L1_TASK_VERSION') or "5.9"
    
    BuildVolume = '/sdf/group/fermi/a/ground/releases/volume11'
    L1BuildBase = os.environ.get('L1_BUILD_DIR') or os.path.join(BuildVolume, 'L1Proc')
    L1Build = os.path.join(L1BuildBase, '5.9')
    Code Block
    languagepy
    titleThis code does NOT work:
    #!/sdf/group/fermi/a/isoc/flightOps/rhel6_gcc44/ISOC_PROD/bin/shisoc python2.6
    
    import os
    import sys
    
    L1Name = os.environ.get('L1_TASK_NAME') or "L1Proc"
    L1Version = os.environ.get('PIPELINE_TASKVERSION') or os.environ.get('L1_TASK_VERSION') or "5.9"
    
    BuildVolume = '/sdf/group/fermi/a/ground/releases/volume11'
    L1BuildBase = os.environ.get('L1_BUILD_DIR') or os.path.join(BuildVolume, 'L1Proc')
    L1Build = os.path.join(L1BuildBase, L1Version)