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Evolution of calibration system of LCLS creates new opportunities and increase complexity. Large number of detectors and scripts for calibration processing makes it hard to track down what is going on. This note is intended to collect in one spot references to location of all intermediate repositories and log files.
Environment variables
psana/psdm
lcls1
source /cds/sw/ds/ana/conda1/manage/bin/psconda.sh, setup_testrel
export SIT_ROOT=/reg/g/psdm/
export SIT_DATA=/cds/group/psdm/data/
export SIT_PSDM_DATA=/cds/data/psdm/
in Detector/src/dir_root.py
DIR_ROOT = os.getenv('SIT_ROOT') # /reg/g/psdm/
DIR_LOG_AT_START = /cds/group/psdm/detector/logs/atstart/
DIR_REPO = /cds/group/psdm/detector/calib/constants/
lclc2
source /cds/sw/ds/ana/conda2/manage/bin/psconda.sh
export DIR_PSDM=/cds/group/psdm # or /sdf/group/psdm # s3df
in lcls2/psana/psana/detector/dir_root.py
DIR_ROOT = os.getenv('DIR_PSDM')
DIR_LOG_AT_START = /cds/group/psdm/detector/logs/atstart/
DIR_REPO = /cds/group/psdm/detector/calib2/constants/
s3df
lcls1
source /sdf/group/lcls/ds/ana/sw/conda1/manage/bin/psconda.sh, setup_testrel
export SIT_ROOT=/sdf/group/lcls/ds/ana/
export SIT_DATA=/sdf/group/lcls/ds/ana/data/
export SIT_PSDM_DATA=/sdf/data/lcls/ds/
lclc2
source /sdf/group/lcls/ds/ana/sw/conda2/manage/bin/psconda.sh
Repositories
Structure
- Log files at start, in the script level directory, and detector-type level directory:
<DIR_LOG_AT_START>/<year>/<year>_lcls<1-or-2>_<script-name>.txt
<DIR_REPO>/scripts/<script-name>/logs/<year>/<time-stamp-of-processing>_log_<script-name>_<uid>.txt@ <<< this is a reference if processing script is completed.
<DIR_REPO>/<dettype>/logs/<year>/<time-stamp-of-processing>_log_<script-name>_<uid>.txt
- panel aliases and per-panel calibration files:
<DIR_REPO>/<dettype>/.aliases.txt
<DIR_REPO>/<dettype>/<panel-id>/<calib-type>/<dettype>_<det-id-alias>_<YYYYMMSS<6-digit-μs>>_<experiment-name>_r<run-number>_<calib-type>.dat
Examples
/cds/group/psdm/detector/logs/atstart/2023/2023_lcls1_det_raw_pixel_status.txt
/cds/group/psdm/detector/calib/constants/scripts/det_raw_pixel_status/logs/2023/2023-04-21T103547_log_det_raw_pixel_status_dubrovin.txt@ <<< reference to:
/cds/group/psdm/detector/calib/constants/epix100a/logs/2023/2023-04-21T103547_log_det_raw_pixel_status_dubrovin.txt
Code Block | ||||
---|---|---|---|---|
| ||||
0001 3925999620-0996513537-2080374794-1794135040-0940361739-2398406657-0419430424 2023-04-21T08:26:51 xpplw3319 r0287 XppGon.0:Epix100a.3 dubrovin
0002 3925999620-0996579585-0553648138-1232098304-1221641739-2650251521-3976200215 2023-04-21T11:10:23 xpplw3319 r0287 XppGon.0:Epix100a.2 dubrovin
0003 3925999620-0996432897-3590324234-1232100352-1154532875-2654088449-0033554455 2023-04-21T11:10:33 xpplw3319 r0287 XppGon.0:Epix100a.1 dubrovin
0004 3925999620-1000248321-4076863498-1794137088-0410306571-2402454273-0067108888 2023-04-21T11:10:46 xpplw3319 r0287 XppGon.0:Epix100a.4 dubrovin |
/cds/group/psdm/detector/calib/constants/epix100a/3925999620-0996513537-2080374794-1794135040-0940361739-2398406657-0419430424/status_data/epix100a_0001_20210716061106_xpplw3319_r0287_status_data.dat
LCLS scripts
script | record at start | repository | logs | control parameters | comments | |
---|---|---|---|---|---|---|
area detectors | ||||||
calibrun | >ana-4.0.46-py3: $SIT_ROOT/detector/logs/atstart/2022/2022_lcls1_calibrun.txt | >ana-4.0.46-py3: $SIT_ROOT/detector/calib/constants/calibrun/ | /reg/g/psdm/logs/calibman/<year>/<month>/<repository>/logs/2022/2022-10-12T103606_log_calibrun_dubrovin.txt >ana-4.0.46-py3: <repository>/logs/<year>/<time-stamp> -_log -<login>-<job-id>_calibrun_<login>.txt <repository>/logs/2022/2022-10-12T103606_log_calibrun_dubrovin.txt | N/A | CLI dark processing for generic detector | |
calibfile | /reg/g/psdm/logs/calibman/<year>/<month>/calibfile.txt >ana-4.0.46-py3: $SIT_ROOT/detector/logs/atstart/2022/2022_lcls1_calibfile.txt | >ana-4.0.46-py3: $SIT_ROOT/detector/calib/constants/calibfile/ | >ana-4.0.46-py3: <repository>/logs/<year>/<time-stamp>_log_calibfile_<login>.txt <repository>/logs/2022/2022-10-13T170608_log_calibfile_dubrovin.txt | -l, --lfname | CLI for calib file deployment under .../<experiment>/calib/... | |
geometry_deploy_constants | /reg/g/psdm/logs/atstart/<year>/<year>_lcls1_geometry_deploy_constants.txt >ana-4.0.46-py3: $SIT_ROOT/detector/logs/atstart/2022/2022_lcls1_geometry_deploy_constants.txt | /reg/g/psdm/detector/calib/geometry/ >ana-4.0.46-py3: $SIT_ROOT/detector/calib/geometry | <repository>/<dettype>/<dettype>_<full-lcls1-detector-name>_<time-stamp>.data >ana-4.0.46-py3: <repository>/logs/<year>/<time-stamp>_log_geometry_deploy_constants_<login>.txt <repository>/logs/2022/2022-10-14T094805_log_geometry_deploy_constants_dubrovin.txt | -o, --dirrepo | Geometry calibration constants deployment CLI | |
dcs | /reg/g/psdm/logs/atstart/<year>/<year>_lcls1_dcs.txt >ana-4.0.46-py3: $SIT_ROOT/detector/logs/atstart/<year>/<year>_lcls1_dcs.txt | /reg/g/psdm/<INS>/<experiment>/calib/<dettype> # default experiment-detector repo or parameter -c <path to local calib> e.g.: -c /reg/d/psdm/detector/calib # detector-dependent repo >ana-4.0.46-py3: $SIT_PSDM_DATA/XPP/xpptut15/calib/epix100a | run-time only | Interaction with dcs-store - hdf5 file calibration constants. | ||
deploy_constants for releases > ana-4.0.42 | /reg/g/psdm/logs/atstart/<year>/<year>_lcls1_deploy_constants.txt >ana-4.0.46-py3: $SIT_ROOT/detector/logs/atstart/2022/2022_lcls1_deploy_constants.txt | /reg/g/psdm/detector/calib/constants/ >ana-4.0.46-py3: $SIT_ROOT/detector/calib/constants/ | <repository>/logs/ | <YEAR><year>/<time-stamp>_log_deploy_constants_<uid>.txt <repository>/logs/2022/2022-10-14T105634_log_deploy_constants_dubrovin.txt | -o , --dirrepo | Deployment of default constants for all generic (one gain range) detectors. Special case of deployment with merging at -t status_extra |
det_pixel_status | $SIT_ROOT/detector/logs/atstart/<year>/<year>_lcls1_det_pixel_status.txt /sdf/group/lcls/ds/ana/detector/logs/atstart/2023/2023_lcls1_det_pixel_status.txt | $SIT_ROOT/detector/calib/constants/ | begins with: /sdf/group/lcls/ds/ana/detector/calib/constants/scripts/det_pixel_status/logs/<year>/<time-stamp>_log_det_pixel_status_<uid>.txt | -o, --dirrepo | Light data processing for bad pixel status. See: Bad pixel mask ... | |
epix10ka | ||||||
epix10ka_offset_calibration | <repository>/logs/<year>_epix10ka_offset_calibration.txt for >ana-4.0.37: /cds/group/psdm/logs/atstart/<year>/<year>_lcls1_epix10ka_offset_calibration.txt | /reg/g/psdm/detector/gains/epix10k/panels/ | <repository>/logs/<year>/<time-stamp>_log_epix10ka_offset_calibration_<login>.txt ???? | -o, --dirrepo | Processing of the charge injection runs with 103 steps/calib-cycles | |
epix10ka_pedestals_calibration | <repository>/logs/<year>_epix10ka_pedestals_calibration.txt for >ana-4.0.37: /cds/group/psdm/logs/atstart/<year>/<year>_lcls1_epix10ka_offset_calibration.txt | /reg/g/psdm/detector/gains/epix10k/panels/ | <repository>/logs/<year>/<time-stamp>_log_epix10ka_pedestals_calibration_<login>.txt | -o, --dirrepo | Dark processing of runs with 5 steps/calib-cycles | |
epix10ka_deploy_constants | <repository>/logs/<year>_epix10ka_deploy_constants.txt for >ana-4.0.37: /cds/group/psdm/logs/atstart/<year>/<year>_lcls1_epix10ka_deploy_constants.txt | /reg/g/psdm/detector/gains/epix10k/panels/ | <repository>/logs/<year>/<time-stamp>_log_epix10ka_deploy_constants_<login>.txt | -o, --dirrepo | Merging and deployment ofper-panel constants. | |
Jungfrau | ||||||
jungfrau_dark_proc | <repository>/logs/<year>_log_jungfrau_dark_proc.txt for >ana-4.0.37: /cds/group/psdm/logs/atstart/<year>/<year>_lcls1_jungfrau_dark_proc.txt | /reg/g/psdm/detector/gains/jungfrau/panels/ contains per-panel constants | <repository>/logs/<year>/<time-stamp>_jungfrau_dark_proc_<login>.txt | -o, --dirrepo | replacement for jungfrau_ndarr_dark_proc intended for per-panel calibration constants. Dark processing of runs with 3 steps/calib-cycles | |
jungfrau_deploy_constants | <repository>/logs/<year>_log_jungfrau_deploy_constants.txt for >ana-4.0.37: /cds/group/psdm/logs/atstart/<year>/<year>_lcls1_jungfrau_deploy_constants.txt | /reg/g/psdm/detector/gains/jungfrau/panels/ | <repository>/logs/<year>/<time-stamp>_jungfrau_deploy_constants_<login>.txt | -o, --dirrepo | works after jungfrau_dark_proc to merge and deploy constants under .../<experiment>/calib/... | |
jungfrau_gain_constants | >ana-4.0.44 /cds/group/psdm/logs/atstart/<year>/<year>_lcls1_jungfrau_gain_constants.txt | /reg/g/psdm/detector/gains/jungfrau/ - reference to dirs with gain constants for panel-ids | /reg/g/psdm/detectorlogs/calibcalibman/jungfrau_gain/<year>/jungfrau-<panel-id>.h5<time-stamp>-<experiment>-<run>-<login>.txt for >ana-4.0.44: /reg/g/psdm/ logsdetector/ calibmangains/jungfrau _gain/logs/<year>/<time-stamp> -_log_jungfrau_gain_constants_<experiment>- <run>-r<run>_<login>.txt | -R, --repdir | ||
DEPRECATED jungfrau_ndarr_dark_proc | /reg/g/psdm/logs/calibman/<year>/<month>/jungfrau_ndarr_dark_proc.txt - log record at start | Dark processing and deployment of calibration constants for etire detector. It was DEPRECATED due to new per-panel approach to calibration constants. Replaced by jungfrau_dark_proc and jungfrau_deploy_constants |
LCLS2 scripts
script | record at start | repository | logs | control parameters | comments | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Generic calibration manager | ||||||||||||||
calibman | /cds/group/psdm/detector/logs/atstart/ | 20222023/ | 20222023_ | logreclcls2_calibman.txt | /cds/group/psdm/ logsdetector/ calibman/lcls2<repository>/<year>/<time-stamp>-<script-name>-<login>.txt calib2/constants/ DEPRECATED: e.g. /cds/group/psdm/logs/calibman/lcls2/2022/20220202T081010-calibman-dubrovin | <repository>/{scripts/<script-name> OR <dettype>}/logs/<year>/<time-stamp>-<script-name>-<login>.txt | -L, --logdir | Interaction with MongoDB etc | ||||||
epix10ka | ||||||||||||||
epix10ka_pedestals_calibration | /cds/group/psdm/logs/atstart/<year>/<year>_logrec_epix10ka | _pedestals_calibration.txt_pedestals_calibration | _<year>.txt | /cds/group/psdm/detector/ | gains2calib2/ | epix10ka/panels/constants/ DEPRECATED: /cds/group/psdm/detector/gains2/epix10ka/panels/ | <repository>/{scripts/<script-name> OR <dettype>}/logs/ | 2022/2022-02-02T115201_log_epix10ka_pedestals_calibration_dubrovin<year>/<time-stamp>-<script-name>-<login>.txt | -o, --dirrepo | |||||
epix10ka_deploy_constants | /cds/group/psdm/logs/atstart/<year>/<year>_logrec_epix10ka_deploy_constants.txt | /cds/group/psdm/ | logsdetector/ | atstartcalib2/ | 2022/2022_logrec_epix10ka_deploy_constants.txtconstants/ DEPRECATED: | <repository>/panels/logs/log_deploy_constants_<year>.txt/cds/group/psdm/detector/gains2/epix10ka/panels/ | <repository>/{scripts/<script-name> OR <dettype>}/logs/<year>/<time-stamp>_log_epix10ka_deploy_constants_<login>.txte.g. -<script-name>-<login>.txt | -o, --dirrepo | ||||||
epix10ka_charge_injection | /cds/group/psdm/detector/gains2logs/epix10kaatstart/panels/logs/2022/2022-02-02T120758_log2023/2023_lcls2_epix10ka_deploycharge_constants_dubrovininjection.txt-o, --dirrepo | /cds/group/psdm/detector/calib2/constants/ | ||||||||||||
epix100, opal | ||||||||||||||
det_dark_proc | /cds/group/psdm/detector/logs/atstart/ | <year>2023/ | <year>2023_ | logreclcls2_det_dark_proc.txt DEPRECATED: /cds/group/psdm/ | detectorlogs/ | calib2/<repository>/<dettype>/logsatstart/<year>/<year> | /<time-stamp>_log_det_dark_proc | _<login>.txt | e.g. /cds/group/psdm/detector/calib2 | /epix100/constants/ | <repository>/{scripts/<script-name> OR <dettype>}/logs/ | 2022/2022-02-02T080749_log_det_dark_proc_dubrovin<year>/<time-stamp>-<script-name>-<login>.txt | ||
Tentative logging for LCLS2
...