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The end result seems to be that we need to repipe the runs in question. Details (from Warren) on that process (based on the second event):

The evt files weren't on xroot because cleanupChunks Stream 180502013.546962321.546962321 deleted them. I've started a RePipe:

$> run=546962321
$> dl=180502012
$> ~glast/pipeline-II/prod/pipeline createStream --stream $run --define downlinkID=$dl,runID=$run RePipe

RePipe finished. then:

$> cd /nfs/farm/g/glast/u28 
$> mv RePipe/$dl/r0$run/*.evt stage/$dl/r0$run 
$> cd /nfs/farm/g/glast/u41/L1/runs/546/r0546962321/ 
$> cd /nfs/farm/g/glast/u41/L1/runs/546/r0546962321/ 
$> /afs/slac.stanford.edu/g/glast/ground/PipelineConfig/Level1/5.6/newChunkList.py /nfs/farm/g/glast/u28/stage/$dl/r0$run 
$> mv r0546962321_180502012_chunkList.txt.new r0546962321_180502012_chunkList.txt 

You'll have to be glastraw for the last 2 steps.

But then I messed up. I rolled back fondChunks 180502012.546962321 and it failed complaining about overlapping data. The right thing is to roll back the whole doRun stream while defining deliveriesToIgnore=180502013 (How?). Which I've now done.

And now there are more errors, which I'll have to investigate later, but probably involve the magic7 file.