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$ sit_setup nightly-20160918 # (Optional) To get the bleeding edge version, use the nightly build
$ psocake -m spi |
1) There are four parameters required to uniquely identify an image at LCLS. Type the experiment name, run number, detector name, and event number in the Experiment Parameters panel.
For this tutorial, we will look at experiment cxitut13, run 10, detector DscCsPad, event 11.
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You can click on the red marker in the plot to jump to the corresponding events. You should .
Saving hits in cxidb format
In the "Hit Finder" panel, we can save the hits in cxidb format. We define a hit as all the events with the metric /entry_1/result_1/nHitsAll above "Minimum threshold".
Optionally, if your data has high background scattering that you wish to subtract away then set the "Background threshold". By default, -1 will not perform any background subtraction. Otherwise, /entry_1/result_1/nHitsAll below "Background threshold" will be considered images containing background only.
Check you are ok with the queue and number of CPUs.
Click on "Save hits" to launch a batch job that will save the hits here:
Filename: /reg/d/psdm/cxi/cxitut13/scratch/<username>/psocake/r0010/cxitut13_0010.cxi
Dataset: /entry_1/instrument_1/detector_1/data
Bug/Comments:
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