The Recon xml script

<Request>

<Name name="ReconXXXRUNNOXXXXXXPASSXXX"/>
<List name="fnum">XXXFILENOSXXX</List>

<OS name="centos7"/>
<Project name="hps"/>
<Track name="reconstruction"/>
<Email email="rafopar@jlab.org" request="false" job="false" />

<Memory space="2400" unit="MB"/>
<DiskSpace space="9" unit="GB"/>
<TimeLimit time="71" unit="hours"/>
<Variable name="heapset" value="-Xmx1400m" />

<Variable name="pre" value="XXXPREFIXXXX_00"/>
<Variable name="rel" value="XXXRELEASEXXX"/>
<Variable name="run" value="XXXRUNNOXXX"/>
<Variable name="pass" value="XXXPASSXXX"/>
<Variable name="passfail" value="XXXPASSXXXfail"/>

<Variable name="category" value="Recon"/>
<Variable name="detector" value="XXXDETECTORXXX"/>
<Variable name="fieldmap" value="XXXFIELDMAPXXX"/>

<Variable name="dstmaker" value="/u/group/hps/hps_soft/hps-dst/build/bin/dst_maker"/>
<Variable name="dstopts" value=""/><!---g -b 0.24"/>-->

<Variable name="java" value="/apps/scicomp/java/jdk1.8/bin/java -XX:+UseSerialGC"/>
<Variable name="jar" value="/u/group/hps/hps_soft/hps-java/XXXJARXXX"/>

<Variable name="tuple_steer" value="/org/hps/steering/analysis/MakeTuplesNoTweak.lcsim"/>
<Variable name="makeTree" value="./makeTree.py"/>

<Variable name="recon_steer" value="/org/hps/steering/recon/EngineeringRun2015FullRecon.lcsim"/>
<Variable name="pulser_steer" value="/org/hps/steering/production/PulserTriggerFilter.lcsim"/>
<Variable name="moller_steer" value="/org/hps/steering/production/MollerCandidateFilter.lcsim"/>
<Variable name="v0_steer" value="/org/hps/steering/production/V0CandidateFilter.lcsim"/>
<Variable name="fee_steer" value="/org/hps/steering/production/FEEFilter.lcsim"/>
<Variable name="p0_steer" value="/org/hps/steering/production/Pair0TriggerFilter.lcsim"/>
<Variable name="s0_steer" value="/org/hps/steering/production/Single0TriggerFilter.lcsim"/>

<Variable name="disk" value="XXXDISKTOPDIRXXX"/>
<Variable name="tape" value="XXXTAPETOPDIRXXX"/>

<Variable name="comm" value="echo ..oo00OO00oo..oo00OO00oo..oo00OO00oo..oo00OO00oo..oo00OO00oo..oo00OO00oo..oo00OO00oo"/>
<Variable name="datls" value="echo ; echo ; date ; ls -l ; echo ; echo"/>
<Variable name="augid" value="echo ; echo AugerID: $AUGER_ID; echo"/>

<Variable name="jrecopts" value=""/> <!---DdisableSvtAlignmentConstants"/>-->

<ForEach list="fnum">
<Job>

<Input src="file:/u/group/hps/production/data/EngRun2015/${pass}/scripts/mkdirs.sh" dest="mkdirs.sh"/>
<Input src="file:/u/group/hps/hps_soft/fieldmaps/${fieldmap}" dest="${fieldmap}"/>
<Input src="mss:/mss/hallb/hps/data/${pre}${run}.evio.${fnum}" dest="in.evio"/>
<Input src="file:/u/group/hps/production/data/EngRun2015/${pass}/scripts/makeTree.py" dest="makeTree.py"/>

<Command><![CDATA[
./mkdirs.sh ${disk}/${pass}

mv -f ${disk}/${pass}/logs/${pre}${run}.${fnum}_recon_${rel}.err ${disk}/${passfail}/logs>& /dev/null
mv -f ${disk}/${pass}/logs/${pre}${run}.${fnum}_recon_${rel}.out ${disk}/${passfail}/logs>& /dev/null
mv -f ${disk}/${pass}/recon/${pre}${run}.${fnum}_recon_${rel}.slcio ${disk}/${passfail}/recon>& /dev/null
mv -f ${disk}/${pass}/dst/${pre}${run}.${fnum}_dst_${rel}.root ${disk}/${passfail}/dst>& /dev/null
mv -f ${disk}/${pass}/data_quality/dqm/${pre}${run}.${fnum}_dqm_${rel}.root ${disk}/${passfail}/data_quality/dqm>& /dev/null
mv -f ${disk}/${pass}/data_quality/recon/${pre}${run}.${fnum}_recon_${rel}.txt ${disk}/${passfail}/data_quality/recon>& /dev/null

mv -f ${disk}/${pass}/skim/pulser/${pre}${run}.${fnum}_pulser_${rel}.slcio ${disk}/${passfail}/skim/pulser>& /dev/null
mv -f ${disk}/${pass}/skim/moller/${pre}${run}.${fnum}_moller_${rel}.slcio ${disk}/${passfail}/skim/moller>& /dev/null
mv -f ${disk}/${pass}/skim/fee/${pre}${run}.${fnum}_fee_${rel}.slcio ${disk}/${passfail}/skim/fee>& /dev/null
mv -f ${disk}/${pass}/skim/v0/${pre}${run}.${fnum}_v0_${rel}.slcio ${disk}/${passfail}/skim/v0>& /dev/null

mv -f ${disk}/${pass}/skim/dst/pulser/${pre}${run}.${fnum}_pulser_${rel}.root ${disk}/${passfail}/skim/dst/pulser>& /dev/null
mv -f ${disk}/${pass}/skim/dst/moller/${pre}${run}.${fnum}_moller_${rel}.root ${disk}/${passfail}/skim/dst/moller>& /dev/null
mv -f ${disk}/${pass}/skim/dst/fee/${pre}${run}.${fnum}_fee_${rel}.root ${disk}/${passfail}/skim/dst/fee>& /dev/null
mv -f ${disk}/${pass}/skim/dst/v0/${pre}${run}.${fnum}_v0_${rel}.root ${disk}/${passfail}/skim/dst/v0>& /dev/null

mkdir ./fieldmap ; mv ${fieldmap} fieldmap

${augid} ; ${comm} ; ${comm} ; ${datls} ; echo "#### Running RECON ..."
${java} ${heapset} ${jrecopts} -cp ${jar} org.hps.evio.EvioToLcio -x ${recon_steer} -r -d ${detector} -R ${run} -DoutputFile=out in.evio -e 5000
${augid} ; ${comm} ; ${comm} ; ${datls} ; echo "Done RECON."

if ( ! -f ./out.slcio ) then
echo ; echo ######################### Missing out.slcio ################################
exit
endif
if ( `ls -l out.slcio | awk '{print$5}'` == "0" ) then
echo ; echo ########################### Zero out.slcio #################################
exit
endif

${augid} ; ${comm} ; ${comm} ; ${datls} ; echo "#### Running DST ..."
${dstmaker} out.slcio -o dst.root ${dstopts}

${augid} ; ${comm} ; ${comm} ; ${datls} ; echo "#### Running NTuple maker ..."
${java} ${heapset} -jar ${jar} -r ${tuple_steer} -i out.slcio -DoutputFile=hps_tuple_txt
python ${makeTree} nt_fee.root hps_tuple_txt_fee.txt
python ${makeTree} nt_moller.root hps_tuple_txt_moller.txt
python ${makeTree} nt_tri.root hps_tuple_txt_tri.txt
${augid} ; ${comm} ; ${comm} ; ${datls} ; echo "#### Done NTuple maker ..."

${augid} ; ${comm} ; ${comm} ; ${datls} ; echo "#### Running Pulser Skim ..."
${java} ${heapset} ${jrecopts} -jar ${jar} -r ${pulser_steer} -DoutputFile=pulser -i out.slcio
${augid} ; ${comm} ; ${comm} ; ${datls} ; echo "#### Running Pulser DST ..."
${dstmaker} pulser.slcio -o pulser.root ${dstopts}

${augid} ; ${comm} ; ${comm} ; ${datls} ; echo "#### Running Moller Skim ..."
${java} ${heapset} ${jrecopts} -jar ${jar} -r ${moller_steer} -DoutputFile=moller -i out.slcio
${augid} ; ${comm} ; ${comm} ; ${datls} ; echo "#### Running Moller DST ..."
${dstmaker} moller.slcio -o moller.root ${dstopts}

${augid} ; ${comm} ; ${comm} ; ${datls} ; echo "#### Running FEE Skim ..."
${java} ${heapset} ${jrecopts} -jar ${jar} -r ${fee_steer} -DoutputFile=fee -i out.slcio
${augid} ; ${comm} ; ${comm} ; ${datls} ; echo "#### Running FEE DST ..."
${dstmaker} fee.slcio -o fee.root ${dstopts}

${augid} ; ${comm} ; ${comm} ; ${datls} ; echo "#### Running V0 Skim ..."
${java} ${heapset} ${jrecopts} -jar ${jar} -r ${v0_steer} -DoutputFile=v0 -i out.slcio
${augid} ; ${comm} ; ${comm} ; ${datls} ; echo "#### Running V0 DST ..."
${dstmaker} v0.slcio -o v0.root ${dstopts}

${augid} ; ${comm} ; ${comm} ; ${datls} ; echo "#### Running P0 Skim ..."
${java} ${heapset} ${jrecopts} -jar ${jar} -r ${p0_steer} -DoutputFile=p0 -i out.slcio
${augid} ; ${comm} ; ${comm} ; ${datls} ; echo "#### Running P0 DST ..."
${dstmaker} p0.slcio -o p0.root ${dstopts}

${augid} ; ${comm} ; ${comm} ; ${datls} ; echo "#### Running S0 Skim ..."
${java} ${heapset} ${jrecopts} -jar ${jar} -r ${s0_steer} -DoutputFile=s0 -i out.slcio
${augid} ; ${comm} ; ${comm} ; ${datls} ; echo "#### Running S0 DST ..."
${dstmaker} s0.slcio -o s0.root ${dstopts}

]]></Command>

<Output src="out.slcio" dest="mss:${tape}/${pass}/recon/${pre}${run}.${fnum}_recon_${rel}.slcio"/>

<Output src="dst.root" dest="file:${disk}/${pass}/dst/${pre}${run}.${fnum}_dst_${rel}.root"/>

<Output src="nt_fee.root" dest="file:${disk}/${pass}/ntuple/fee/${pre}${run}.${fnum}_nt_fee_${rel}.root"/>
<Output src="nt_moller.root" dest="file:${disk}/${pass}/ntuple/moller/${pre}${run}.${fnum}_nt_moller_${rel}.root"/>
<Output src="nt_tri.root" dest="file:${disk}/${pass}/ntuple/tri/${pre}${run}.${fnum}_nt_tri_${rel}.root"/>

<Output src="moller.slcio" dest="file:${disk}/${pass}/skim/moller/${pre}${run}.${fnum}_moller_${rel}.slcio"/>
<Output src="pulser.slcio" dest="file:${disk}/${pass}/skim/pulser/${pre}${run}.${fnum}_pulser_${rel}.slcio"/>
<Output src="v0.slcio" dest="file:${disk}/${pass}/skim/v0/${pre}${run}.${fnum}_v0_${rel}.slcio"/>
<Output src="s0.slcio" dest="file:${disk}/${pass}/skim/s0/${pre}${run}.${fnum}_s0_${rel}.slcio"/>
<Output src="p0.slcio" dest="file:${disk}/${pass}/skim/p0/${pre}${run}.${fnum}_p0_${rel}.slcio"/>
<Output src="fee.slcio" dest="file:${disk}/${pass}/skim/fee/${pre}${run}.${fnum}_fee_${rel}.slcio"/>

<Output src="pulser.root" dest="file:${disk}/${pass}/skim/dst/pulser/${pre}${run}.${fnum}_pulser_${rel}.root"/>
<Output src="moller.root" dest="file:${disk}/${pass}/skim/dst/moller/${pre}${run}.${fnum}_moller_${rel}.root"/>
<Output src="v0.root" dest="file:${disk}/${pass}/skim/dst/v0/${pre}${run}.${fnum}_v0_${rel}.root"/>
<Output src="s0.root" dest="file:${disk}/${pass}/skim/dst/s0/${pre}${run}.${fnum}_s0_${rel}.root"/>
<Output src="p0.root" dest="file:${disk}/${pass}/skim/dst/p0/${pre}${run}.${fnum}_p0_${rel}.root"/>
<Output src="fee.root" dest="file:${disk}/${pass}/skim/dst/fee/${pre}${run}.${fnum}_fee_${rel}.root"/>

<Stderr dest="file:${disk}/${pass}/logs/${pre}${run}.${fnum}_${rel}_${category}.err"/>
<Stdout dest="file:${disk}/${pass}/logs/${pre}${run}.${fnum}_${rel}_${category}.out"/>

</Job>
</ForEach>

</Request>