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These instructions assume "hps-distribution.jar" is the hps-java jar file you downloaded using the instructions on Running HPS Java, or compiled yourself.
The input data for this step is readout data; use either real 2012 test run data (EVIO format) or generate from simulation using the instructions in Running 2014 Readout Simulation.
Use TestRunOfflineRecon.lcsim for both test run data; substitute HPS2014OfflineRecon.lcsim for simulated 2014 data.
java -cp hps-distribution-bin.jar org.hps.evio.EvioToLcio -r -x /org/hps/steering/recon/TestRunOfflineRecon.lcsim prod/hps_001351.evio.0 -DoutputFile=recon.slcio
Note: the "-d HPS-TestRun-v3" specifies the detector to be used in the reconstruction and is required. See Detector Geometry Overview for the current best detector.
java -cp hps-distribution-bin.jar org.hps.evio.EvioToLcio prod/hps_001351.evio.0 -l raw.slcio java -jar hps-distribution-bin.jar -r /org/hps/steering/recon/TestRunOfflineRecon.lcsim -i raw.slcio -DoutputFile=recon
This is just the second half of the two-step process.
java -jar hps-distribution-bin.jar -r /org/hps/steering/recon/TestRunOfflineRecon.lcsim -i raw.slcio -DoutputFile=recon
java -jar hps-distribution.jar -r /org/hps/steering/readout/HPSTrackingDefaults.lcsim -i ap2.2gev075mev_001_SLIC.slcio -DoutputFile=ap_recon.slcio