Content
2015-04-08
Quick start, calibration, detector alignment, peak finder, scripts
2015-05-04
Angles phi and beta, fraser transformation
2015-08-19
Analysis with new peakfinder
2015-10-20
Indexing
2015-11-06
Geometry re-alignment
2015-12-01
Indexing after fraser transformation with β=0
2016-02-02
Cross-checks: Lattice and look up table
2016-03-25
Masks, Background subtraction
2016-04-05
Test of Peak Finders
2016-04-05
References
Calibration Management Tool
Detector alignment tool
CSPAD Alignment
Meng's
spreadsheet
to the runs taken
Meng's
link for the CFEL confluence
that has the data analysis summary
Meng's
amyloid_math1.pdf
Direct mapping of fiber diffraction patterns into reciprocal space, Norbert Stribeck* and Ulrich Nochel
(
download
)
Preprocessing averaged XFEL data from adenovirus peptide amyloid and derivation of specimen characteristics,
David Wojtas and Rick Millane
Polanyi(1921).Z.Phys.7.pdf
fiber-diffraction-formalism.pdf
- my note
J.Biol.Chem-2005-v280-N4-2481-Papanikolopoulou.pdf
Nature-1999-v401-935-Raaij.pdf
class ImgAlgos.PyAlgos
- collection of n-d array processing algorithms
class Detector.PyDetector
- direct access to detector data and calibration n-d arrays
2015-10-13-meng-indexing1.pdf
,
2015-10-13-meng-lineout_from_169_a.txt
- Meng's calculations for indexing
pyimgalgos
(source)
FiberIndexing.py
(source)
FiberAngles.py
(source)
TDFileContainer.py
(source),
TDFileContainer
(auto-doc)
Fraser transformation