To get the ami2 environment on the psana cluster ("ssh psana"):
source /reg/g/psdm/sw/conda2/manage/bin/psconda.sh conda activate ps-2.0.10
Run the appropriate command from the "examples" sections below (you should see a window similar to this) and do (for example) the following:
- click on "apply" (menu item near the top left) to activate the analysis "graph"
- click on one of the green boxes to open a plot
TMO Example
Example includes:
- waveform viewing, ROI, integration and normalization of peak area
- waveform peak finding, histogramming, and scaling of values using a polynomial "calibration"
ami-local -l /reg/g/psdm/tutorials/ami2/tmo/run43.fc -t -n 1 hdf5:///reg/g/psdm/tutorials/ami2/tmo/run43.json
NEH2.2 Example
Example includes:
- photon centroid finding on vertically binned Andor camera
- linearity check of normalization (andor camera intensity vs. acqiris waveform intensity) with pearson-R calculation
ami-local -l /reg/g/psdm/tutorials/ami2/neh2.2/run22.fc -t -n 1 hdf5:///reg/g/psdm/tutorials/ami2/neh2.2/worker.json
Overview
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