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All instructions given here assume you're using the steering files included with the release. If you write your own, you can point hps-java to it by omitting the "-r" and using the file path of your .lcsim file:
java -jar hps-distribution.jar -i recon.slcio my_steering_files/MyAnalysis.lcsim -DoutputFile=analysis_plots
The standard steering files are in trunk/steering-files/src/main/resources/org/hps/steering/.
Every package in hps-java does have a default level which comes from:
trunk/logging/src/main/resources/org/hps/logging/config/logging.properties
provided you set the system property as I described or use one of the wrapper scripts from distribution.
Or you can override the default levels by providing your own custom config using
java -D -Djava.util.logging.config.file=mylogging.properties
There you can set the log level of all the packages in your custom config.
This is handled by: https://docs.oracle.com/javase/7/docs/api/java/util/logging/package-summary.html
The levels in descending order are:
SEVERE (highest value)
WARNING
INFO
CONFIG
FINE
FINER
FINEST (lowest value)
ALL (Give all messages)
OFF (Suppress all messages)