Introduction
XTC Explorer is a GUI-based tool to explore interactively the XTC data files.
Data is extracted using the LCLS framework pyana.
This application is implemented as a Python module for pyana.
GUI is implemented on PyQt,
visualization of data uses matplotlib, data processing algorithms are accelerated by NumPy and SciPy libraries.
Based on selections made in the GUI, xtcexplorer writes out pyana configuration files with names xb_pyana_XXXX.cfg, where XXXX is a random four-digit number. You can use them to run pyana directly from the command line. But they accumulate, so you might want to remove these regularly...
Naming conventions:
- project name: XTC Explorer
- package name in the offline software releases: XtcExplorer
- executable name: xtcexplorer
Manual: XTC Explorer
Author: Ingrid Ofter
Latest tags:
2012-Aug-20 ofte V00-01-37
...
2013-Mar-14 salnikov V00-03-00
This tutorial shows how to set up environment, start application, explore content of the xtc file, etc.
Set up environment
- See for details Analysis Workbook. Account Setup
- Log onto any machine of the interactive pools psananeh or psanafeh:
ssh -Y pslogin ssh psananeh or ssh psanafeh
- Once per session execute one of the following scripts
- for bash shell:
. /reg/g/psdm/etc/sit_env.sh
- or for csh shell:
source /reg/g/psdm/etc/sit_env.csh
- for bash shell:
- You should always run this application from your own release working directory:
At this point you are ready to go.
newrel ana-current my_tutorial_release; cd my_tutorial_release; sit_setup;
Optional: if something need to be changed in code, check out the latest version of package and "compile":
addpkg XtcExplorer HEAD scons
Exercise 1: Start xtcexplorer and select the XTC file
Application GUI can be started by the command
xtcexplorer
To proceed the xtc file name should be pointed using one of four methods:
- use command line parameter
xtcexplorer /reg/d/psdm/XPP/xpptut13/xtc/e308-r0008-*.xtc or xtcexplorer /reg/d/psdm/SXR/sxrtut13/xtc/e306-r0366-*.xtc
- use Instrument-Experiment-Run number-Load buttons in GUI
- use file browser
- type-in the file name
Once a file or more has been connected, another GUI will pop up (possibly after a short delay while the file(s) content is being investigated). This GUI displays information about the file content and help with further processing of the data in pyana.Exercise 1:
References
XTC Explorer
HDF5 Explorer
Pyana User Manual
Migration from pyana to psana