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You need to have lcsim installed and compiled. These instructions assume you have symlinks such that "hps-java.jar" points to hps-java/target/hps-java-1.2-SNAPSHOT-bin.jar, and "steering" points to hps-java/src/main/resources/org/lcsim/hps/steering/.
The input data for this step is readout data; use either real 2012 test run data (EVIO format) or generate from simulation using the instructions in Running Readout Simulation.
Use TestRunOfflineRecon.lcsim for both test run data and simulated 2014 data.
java -cp hps-java.jar org.lcsim.hps.evio.TestRunEvioToLcio -x steering/TestRunOfflineRecon.lcsim -d HPS-TestRun-v3 prod/hps_001351.evio.0 -DoutputFile=recon.slcio
Note: the "-d HPS-TestRun-v3" specifies the detector to be used in the reconstruction and is required. "HPS-TestRun-v3" is the latest as of this note, but make sure you ask the production manager about what detector to use for your purpose.
java -cp hps-java.jar org.lcsim.hps.evio.TestRunEvioToLcio prod/hps_001351.evio.0 -l raw.slcio java -jar hps-java.jar steering/TestRunOfflineRecon.lcsim -i raw.slcio -DoutputFile=recon.slcio
This is just the second half of the two-step process.
java -jar hps-java.jar steering/TestRunOfflineRecon.lcsim -i raw.slcio -DoutputFile=recon.slcio
java -jar hps-java.jar steering/HPSTrackingDefaults.lcsim -i ap2.2gev075mev_001_SLIC.slcio -DoutputFile=ap_recon.slcio