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You need to have lcsim installed and compiled. These instructions assume you have symlinks such that "hps-java.jar" points to hps-java/target/hps-java-1.2-SNAPSHOT-bin.jar, and "steering" points to hps-java/src/main/resources/org/lcsim/hps/steering/.
The input data for this step is SLIC output; download from one of the sources listed on Finding Data or generate using the instructions on Generating Monte Carlo Data.
Photon beam events are simulated without pileup, so empty events must be inserted.
java -Xmx10m -cp hps-java.jar org.lcsim.hps.users.meeg.FilterMCBunches in.slcio filtered.slcio -e250
java -jar hps-java.jar steering/HPSTestRunReconToEvio.lcsim -i filtered.slcio -DevioFile=readout.evio
java -jar hps-java.jar steering/HPSTestRunReconToLcio.lcsim -i filtered.slcio -DoutputFile=readout.slcio
java -jar hps-java.jar steering/HPS2014ReadoutToEvio.lcsim -i in.slcio -DoutputFile=readout.evio
java -jar hps-java.jar steering/HPS2014ReadoutToLcio.lcsim -i in.slcio -DoutputFile=readout.slcio