Pedestals
psana -c ana-cxii0212/psana-cxii0212-r0104-pedestals.cfg
where ana-cxii0212/psana-cxii0212-r0104-pedestals.cfg
[psana] files = /reg/d/psdm/cxi/cxii0212/xtc/e165-r0104-s00-c00.xtc \ /reg/d/psdm/cxi/cxii0212/xtc/e165-r0104-s02-c00.xtc events = 1000 modules = ImgAlgos.CSPadArrAverage [ImgAlgos.CSPadArrAverage] source = DetInfo(CxiDs1.0:Cspad.0) key = avefile = ana-cxii0212/cspad-cxii0212-r0104-pedestals-ave.dat rmsfile = ana-cxii0212/cspad-cxii0212-r0104-pedestals-rms.dat print_bits = 15 evts_stage1 = 100 evts_stage2 = 100 gate_width1 = 200 gate_width2 = 20
./PlotCSPadArrayFromFile.py ana-cxii0212/cspad-cxii0212-r0104-pedestals-ave.dat 800 1400
Copy the pedestal file:
bq: cp ana-cxii0212/cspad-cxii0212-r0104-pedestals-ave.dat ana-cxii0212/calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/pedestals/0-end.data
Background
Averaged background for 1000 events is obtained from:
psana -c ana-cxii0212/psana-cxii0212-r0091-bkgd-ave.cfg
where ana-cxii0212/psana-cxii0212-r0091-bkgd-ave.cfg
:
[psana] files = \ /reg/d/psdm/cxi/cxii0212/xtc/e165-r0091-s00-c00.xtc \ /reg/d/psdm/cxi/cxii0212/xtc/e165-r0091-s00-c01.xtc \ /reg/d/psdm/cxi/cxii0212/xtc/e165-r0091-s02-c00.xtc \ /reg/d/psdm/cxi/cxii0212/xtc/e165-r0091-s02-c01.xtc #skip-events = 100 events = 1000 modules = cspad_mod.CsPadCalib ImgAlgos.CSPadArrAverage [cspad_mod.CsPadCalib] inputKey = outputKey = calibrated doPedestals = yes doPixelStatus = no doCommonMode = yes [ImgAlgos.CSPadArrAverage] source = DetInfo(CxiDs1.0:Cspad.0) key = calibrated avefile = ana-cxii0212/cspad-cxii0212-r0091-background-ave.dat rmsfile = ana-cxii0212/cspad-cxii0212-r0091-background-rms.dat print_bits = 15
./PlotCSPadArrayFromFile.py ana-cxii0212/cspad-cxii0212-r0091-background-ave.dat -2 10
Permanent mask
./MakePixelMask.py ana-cxii0212/cspad-cxii0212-r0091-background-ave.dat 2 ana-cxii0212/cspad-cxii0212-r0091-mask-<type>.dat
... with minor edition of the MakePixelMask.py
we get masks:
ana-cxii0212/cspad-cxii0212-r0091-mask-bkgd.dat - for background with threshold 2
ana-cxii0212/cspad-cxii0212-r0091-mask-rects.dat - for rectangular regions
ana-cxii0212/cspad-cxii0212-r0091-mask-badregs.dat - for both, background and rectangular regions
./PlotCSPadArrayFromFile.py ana-cxii0212/cspad-cxii0212-r0091-mask-bkgd.dat -1 2
Noisy-pixel mask
From peak finder output
./PlotCSPadArrayFromFile.py ana-cxii0212/cspad-cxii0212-r0091-noise-mask-out.dat -1 2
Peak finder / selector
psana -c ana-cxii0212/psana-cxii0212-r0091-peak-finder.cfg
where the ana-cxii0212/psana-cxii0212-r0091-peak-finder.cfg
:
[psana] files = \ /reg/d/psdm/cxi/cxii0212/xtc/e165-r0091-s00-c00.xtc \ /reg/d/psdm/cxi/cxii0212/xtc/e165-r0091-s00-c01.xtc \ /reg/d/psdm/cxi/cxii0212/xtc/e165-r0091-s02-c00.xtc \ /reg/d/psdm/cxi/cxii0212/xtc/e165-r0091-s02-c01.xtc #skip-events = 100 #events = 1000 experiment = cxii0212 calib-dir = ana-cxii0212/calib modules = cspad_mod.CsPadCalib \ ImgAlgos.CSPadMaskApply \ ImgAlgos.CSPadArrPeakFinder \ PSXtcOutput.XtcOutputModule [cspad_mod.CsPadCalib] inputKey = outputKey = calibrated doPedestals = yes doPixelStatus = no doCommonMode = yes [ImgAlgos.CSPadMaskApply] source = DetInfo(CxiDs1.0:Cspad.0) inkey = calibrated outkey = masked_arr mask_fname = ana-cxii0212/cspad-cxii0212-r0091-mask-badregs.dat masked_amp = 0 print_bits = 5 mask_control_bits = 15 [ImgAlgos.CSPadArrPeakFinder] source = DetInfo(CxiDs1.0:Cspad.0) key = masked_arr key_peaks_out = peaks hot_pix_mask_inp_file = ana-cxii0212/cspad-cxii0212-r0091-noise-mask-ini.dat hot_pix_mask_out_file = ana-cxii0212/cspad-cxii0212-r0091-noise-mask-out.dat frac_noisy_evts_file = ana-cxii0212/cspad-cxii0212-r0091-noise-frac.dat evt_file_out = tmp/cspad-ev- rmin = 8 dr = 1 SoNThr_noise = 3 SoNThr_signal = 4 frac_noisy_imgs = 0.9 peak_npix_min = 5 peak_npix_max = 500 peak_amp_tot_thr = 0. peak_SoN_thr = 5. event_npeak_min = 4 event_npeak_max = 1000 event_amp_tot_thr = 0. nevents_mask_update = 0 nevents_mask_accum = 50 selection_mode = SELECTION_ON out_file_bits = 15 print_bits = 1601 [PSXtcOutput.XtcOutputModule] dirName = ./xtc
Intermediate:
ImgAlgos.CSPadArrPeakFinder NFrames: 1000 NHits: 7 ( 0.70%) Time: 220.357 sec ( 4.538 fps)
ImgAlgos.CSPadArrPeakFinder NFrames: 2000 NHits: 15 ( 0.75%) Time: 436.159 sec ( 4.585 fps)
ImgAlgos.CSPadArrPeakFinder NFrames: 3000 NHits: 25 ( 0.83%) Time: 651.769 sec ( 4.603 fps)
Summary:
TBA
Selected events:
Images 257, 485, 553, and 823: