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Code Block
languagebash
# PSOCAKE2 (Run 17 or older)
function psocake2 ()
{
    echo "Activating psocake py2"
    source /reg/g/psdm/etc/psconda.sh
    # CrystFEL compatible version for psocake2
    source /reg/g/cfel/crystfel/crystfel-0.8.0/setup-sh # CrystFEL compatible version for psocake2
}

# PSOCAKE3 (Run 18 or newer)
function psocake3 ()
{
    echo "Activating  sourcepsocake py3"
    source /reg/g/psdm/etc/psconda.sh -py3
    # Crystfel compatible version for psocake3
    source /reg/g/cfel/crystfel/crystfel-0.9.1/setup-sh # Crystfel compatible version for psocake3 
}

# CCP4 (version may change)
source /reg/common/package/ccp4-7.1/bin/ccp4.setup-sh
# XDS
export PATH=/reg/common/package/XDS-INTEL64_Linux_x86_64:$PATH

Then source ~/.bashrc 

For LCLS Run 18 or newer runs, call the psocake3 function by typing psocake3 in the terminal.

For older LCLS runs, use psocake2. 

Code Block
languagebash
$ source ~/.bashrc
$ psocake3

For this tutorial, we will look at experiment cxic00318, run 124, detector jungfrau4M, event 33.

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