Page History
...
| Code Block | ||
|---|---|---|
| ||
Citation for psocake (and other psana-based programs):
@Article{Thayer2017,
author="Thayer, J. and Damiani, D. and Ford, C. and Dubrovin, M. and Gaponenko, I. and O'Grady, C. P. and Kroeger, W. and Pines, J. and Lane, T. J. and Salnikov, A. and Schneider, D. and Tookey, T. and Weaver, M. and Yoon, C. H. and Perazzo, A.",
title="Data systems for the Linac coherent light source",
journal="Advanced Structural and Chemical Imaging",
year="2017", month="Jan", day="14", volume="3", number="1", pages="3", issn="2198-0926",
doi="10.1186/s40679-016-0037-7", url="https://doi.org/10.1186/s40679-016-0037-7"}
@article{Damiani:zw5004,
author = "Damiani, D. and Dubrovin, M. and Gaponenko, I. and Kroeger, W. and Lane, T. J. and Mitra, A.
and O'Grady, C. P. and Salnikov, A. and Sanchez-Gonzalez, A. and Schneider, D. and Yoon, C. H.",
title = "{Linac Coherent Light Source data analysis using {it psana}}",
journal = "Journal of Applied Crystallography",
year = "2016", volume = "49", number = "2", pages = "672--679", month = "Apr",
doi = {10.1107/S1600576716004349}, url = {http://dx.doi.org/10.1107/S1600576716004349}, } |
Please connect to psana machines via NoMachine for less lag in graphics. Instructions here: Remote Visualization
Starting psocake in SFX mode
...
| Code Block | ||
|---|---|---|
| ||
# PSOCAKE2 (Run 17 or older)
function psocake2 ()
{
echo "Activating psocake py2"
source /reg/g/psdm/etc/psconda.sh -py2
source /reg/g/cfel/crystfel/crystfel-0.8.0/setup-sh # CrystFEL compatible version for psocake2
}
# PSOCAKE3 (Run 18 or newer)
function psocake3 ()
{
echo "Activating psocake py3"
source /reg/g/psdm/etc/psconda.sh -py3
source /reg/g/cfel/crystfel/crystfel-0.9.1/setup-sh # Crystfel compatible version for psocake3
}
# CCP4 (version may change)
source /reg/common/package/ccp4-7.1/bin/ccp4.setup-sh
# XDS
export PATH=/reg/common/package/XDS-INTEL64_Linux_x86_64:$PATH |
...
Overview
Content Tools