...
1/11/2012 Under Construction
TASK FUNCTION
setupRun.py
- read & parse 'runList' file
- identify run# and input files for this stream
- calculate #clumps (substreams in subtask)
- create env-vars for subtask
createClumps.jy
- read env-vars
- create task-level pipeline-vars for subTask
- create subStreams (with pipeline-var list)
| Wiki Markup |
|---|
\[subtask\] processClump.py (all parallel analysis processing) |
- unpack pipeline-vars (as env-vars)
- define skipEvents/lastEvent for Gleam
- limit
- infile staging disabled
- infile slicing (skimmer) disabled
- infile env-vars for Gleam
- construct output filenames
- output file staging
- set output file env-vars for Gleam
- prepare .rootrc
- select and stage-in FT2 file
- (Gleam setup)
- select jobOptions file and customize
- Run Gleam
- (SVAC setup)
Wiki Markup Run svac \[disabled\]Wiki Markup Run makeFT1 \[disabled\]- Finalize staging
- create new subTask-level pipeline-vars with clump output info
| Wiki Markup |
|---|
\[subtask\] clumpDone.jy |
- (nothing!)
setupMerge.jy
- unpack task-level pipeline variables
- create new task-level pipeline vars from subTask vars
- create two pipeline files: pipelineVarList.txt and clumpFileList.txt
mergeClumps.py
- open and read the two pipeline files, store in dicts
- stage in FT2 file
- (merge files)
- create tool-specific lists of files to be merged
- loop over all file types to be merged
- construct new output file name (with proper version)
- if # files to be merged == 1, just use 'cp'
- skimmer merge
- stage-out output file
- run skimmer
- FT1 merge
- stage-out output file
- run fmerge
- HADD merge (histograms)
- stage-out output file
- run hadd
- (post-merge data product generation)
- stage-in input MERIT file, if necessary
- FT1
- generate new output file name (wth proper version)
- stage-out output file
- runMakeFT1()
- ELECTRONFT1
- generate new output file name (wth proper version)
- stage-out output file
- runMakeFT1()
- LS1
- generate new output file name (wth proper version)
- stage-out output file
- runMakeLS1()
- FILTEREDMERIT
- generate new output file name (wth proper version)
- stage-out output file
- run skimmer
- ELECTRONMERIT
- generate new output file name (wth proper version)
- stage-out output file
- run skimmer
- Finalize staging
- Produce list of files for dataCat registration
runDone.jy
- Unpack task-level pipeline vars
- Register (merged) output file in dataCat
- Make entry in HISTORYRUNS DB table
CODE
Directories
/nfs/farm/g/glast/u38/Reprocess-tasks
...
Task preparation |
|
|---|---|
taskConfig.xml | task definition |
genRunFile.csh* | generate list of input files for reprocessing |
|
|
Pipeline code |
|
envSetup.sh* | set up environment to run GR/ST/FT/etc (called by pipeline) |
config.py | task configuration (imported by all .py) |
setupRun.py* | setup for reprocessing a single run |
createClumps.jy | create subprocess for processing a "clump" (part of a run) |
processClump.py* | process a clump of data |
clumpDone.jy | cleanup after clump processing |
setupMerge.jy | setup for merging clumps |
mergeClumps.py* | merge all clumps for single run |
runFT1skim.sh* | skim FT1 events |
runDone.jy | final bookkeeping after run reprocessed (dataCat and runHistory) |
commonTools@ | link to commonTools |
|
|
Input data to pipeline code |
|
doRecon.txt | Gleam job options |
fullList.txt | List of reprocessing input data files |
removeMeritColumns.txt | List of columns to remove from MERIT files |
runFile.txt@ | Sym link to fullList.txt |
|
|
Pipeline control code |
|
trickleStream.py* | task-specific config for trickle.py |
...