Page History
...
Note the DS1 and DS2 chambers can move to different locations. Also, Camera1 and Camera2 can move between DS1 and DS2 chambers. Sample chambers, SC1-SC3 are fixed.
Geometries
Date | Who uploaded | Experiment | Geometry File Name | File Type | DAQ "Source" Name (Ds1/Ds2) | Front/Back | Camera | Comment |
---|
2020- |
08- |
25 | yoon |
cxic00318 | 123-end.data cxic00318 |
.geom | psana/crystfel | CxiDs1.0: |
Jungfrau.0 | jungfrau4M | Front |
Based on dubrovin's psana geometry, tweaked x,y,z detector position with psocake to optimize indexing results.
Prediction refine / geoptimization was NOT performed.
Jungfrau | Indexed lysozyme run123 with CrystFEL | |||||||
2019-08-08 | cpo | geometry-2019-05-06.txt | psana | Epix10ka2M | Currently the only Epix10ka2M that we have. Details about geometry can be found here. | |||
2017-06-29 | yoon | cxi10416 | cxi10416.geom | crystfel |
CxiDs1.0:Cspad.0 |
Front | Based on dubrovin's psana geometry, tweaked x,y,z detector position with psocake to optimize indexing results. Prediction refine / geoptimization was NOT performed. | ||
2017-06-07 | dubrovin | cxi10416 | <PATHREPO>/detector/alignment/cspad/calib-cxi-camera1-2014-09-24/calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/geometry/geometry-camera1-in-ds1-cxi10416-r0028 |
.data | psana | CxiDs1.0:Cspad.0 | Front |
Camera1_V16_20140924? | Tuning with geo using cxi10416-r0028 NOTE: x and y tilt angles were applied | |||||||
2016-12-19 | yoon | cxi04216 | 53-end.data | psana | CxiDs1.0:Cspad.0 | Front | CrystFEL predrefine |
geometry converted to psana format using psgeom | ||||||
2016-09-29 | yoon | cxic0315 | cxic0315.geom | crystfel | CxiDs2.0:Cspad.0 | Back |
Valid from 21/Sep/16 | ||||||
2016-09-29 | yoon | cxi11716 | cxi11716.geom | crystfel | CxiDs1.0:Cspad.0 | Front |
Optimized using detector-shift | ||
2016-05-25 | dubrovin | from 05/25 |
<PATHREPO>/detector/alignment/cspad/calib-cxi-camera2-2016-05-25/calib/CsPad::CalibV1/CxiDs2.0:Cspad.0/geometry/0-end.data | psana | CxiDs2.0:Cspad.0 |
Camera2_V16_20160525? | New optical measurements from 2016-05-25. Quad positions age not aligned | |||||||
2016-05-25 | yoon | cxi06216 | cxij9415_v5.geom (crystfel) 22-end.data(psana) | crystfel/psana | CxiDs1.0:Cspad.0 | Front | Camera1_V16? | Geometry file optimized using lysozyme by O. Yefanov using intor. |
2016-04-26 | cpo | cxil8416 | cxil8416_v2.geom (crystfel) cxil8416_v3.dat (psana) | crystfel/psana | CxiDs2.0:Cspad.0 | Front | Camera2_V16_20160205 | psana translated from crystfel and moved -200um in x and -100um in y using geo to center lysozyme rings from runs 153,154,155 |
2016-04-12 | yoon | cxi06416 | 0-end.data | psana | CxiDg2.0:Cspad2x2.0 | Back |
Geometry file optimized using diffraction from a sphere. | ||||||||
2016-02-27 | yoon | cxi02416 | cxi02416_400.geom | crystfel-cxidb | CxiDs2.0:Cspad.0 | Front | Camera2_V16_20160205 | Geometry file optimized using lysozyme. The xxx in cxi02416_xxx.geom represents the camera length. The detector was translated in x & y w.r.t powder ring and detector_shift script was used to correct for offset. |
2016-01-09 | yoon | cxic0915 | crystfel-cxidb | CxiDs1.0:Cspad.0 | Front | Camera1_V16_20140924 | The refined geometry file for detector calibration by Chuck Yoon. The xxx in cxic0915_xxx.geom represents the camera length. The detector was translated in x & y w.r.t powder ring at different detector distances. | |
2015-12-22 | valerio | cxij9415 | cxij9415.geom | crystfel-cxidb | CxiDs1.0:Cspad.0 | Front | Camera1_V16_20140924 | The refined geometry file for LJ94 from Nadia Zatsepin. PI: Dominik Oberthuer Thanks to Yun-Xing Wang for the data used for the refinement |
2015-12-07 | yoon | cxic0915 | cxic0915-v4.geom | crystfel-cxidb | CxiDs1.0:Cspad.0 | Front | Camera1_V16_20140924 | The refined geometry file for detector calibration by Chuck Yoon. We thank Petra Fromme's team for the phycocynin sample. |
2015-11-12 | yoon | cxij4915 | cxij4915-v12.geom | crystfel-cxidb | CxiDs1.0:Cspad.0 | Front | Camera2_V16_20150120 | The refined geometry file for L049 using Intor from Nadia Zatsepin. PI: Petra Fromme Please acknowledge Petra's team for the use of this geometry file in your research if you use any part of this geometry file. Do not remove the history section of the geom file. |
2015-07-14 | valerio | cxih9615 |
<PATHREPO>/detector/alignment/cspad/openGeom/crystfel/ | crystfel-cxidb | CxiDs2.0:Cspad.0 |
Camera1_V16_20140924 | File from 2015-06-27 further refined using more data | ||
2015-06-27 | valerio | cxih9615 |
detector/alignment/cspad/openGeom/crystfel/ | crystfel-cxidb | CxiDs2.0:Cspad.0 |
Camera1_V16_20140924 | The refined geometry file for LH96 (Obertheuer beamtime) | ||
2015-06-02 | dubrovin | cxih8015 |
<PATHREPO>/detector/alignment/cspad/calib-cxi-camera1-2014-09-24/calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/geometry/geometry-camera1-in-ds2-cxih8015-r176.data | psana | CxiDs2.0:Cspad.0 |
Camera1_V16_20140924 | Generated from /reg/g/psdm/detector/alignment/cspad/calib-cxi-camera1-2014-09-24/2014-09-24-CSPAD-CXI-Camera1-Metrology-corr.txt Geometry file is deployed for cxi86715 | ||
2015-04-01 | valerio | cxii6315 |
<PATHREPO>/detector/alignment/cspad/openGeom/crystfel/ | crystfel-cxidb | CxiDs1.0:Cspad.0 |
Camera2_V16_20150120 | The refined geometry file for LI63 (Zatsepin beamtime) Mislabeled in openGeom folder Caution: geoptimiser v0.6.0 has a bug which could have effected this geom file. | ||
2015-03-26 | cpo |
<PATHREPO>/detector/alignment/cspad/calib-cxi-camera1-2014-09-24/calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/geometry/0-end.data | psana | CxiDs1.0:Cspad.0 |
Camera1_V16_20140924 | Generated from 2014-09-24-CSPAD-CXI-Camera1-Metrology.xlsx. No quad alignment. | ||
2015-03-26 | cpo |
<PATHREPO>/detector/alignment/cspad/calib-cxi-camera2-2015-01-20/calib/CsPad::CalibV1/CxiDs2.0:Cspad.0/geometry/0-end.data | psana | CxiDs2.0:Cspad.0 |
Camera2_V16_20150120 | Generated from 2015-01-20-CSPAD-CXI-Camera2-Metrology.xlsx. No quad alignment. | |
2015-03-25 | dubrovin |
<PATHREPO>/detector/alignment/cspad/calib-cxi-camera1-2014-09-24/2014-09-24-CSPAD-CXI-Camera1-Metrology.txt | xlsx txt |
Camera1_V16_20140924 | optical metrology converted using calibman | ||
2015-03-25 | dubrovin |
detector/alignment/cspad/calib-cxi-camera2-2015-01-20/2015-01-20-CSPAD-CXI-Camera2-Metrology.txt | xlsx txt |
Camera2_V16_20150120 | optical metrology converted using calibman | |
2015-03-21 | valerio | cxig0915 |
<PATHREPO>/detector/alignment/cspad/openGeom/crystfel/ | crystfel-cxidb | CxiDs1.0:Cspad.0 |
Camera2_V16_20150120 | The final refined geometry file for LG09 (Schmidt beamtime) for CXIDB data format. Mislabeled in openGeom folder | |
2014-12-17 | koglin |
<PATHREPO>/detector/alignment/cspad/Dg4Cspad_ami_20141217_geo.1e000a00.dat | ami |
Camera3_V16_20131009 | Need to copy over (permissions?) cp /reg/g/pcds/pds/cspadcalib/geo.1e000a00.dat /reg/g/psdm/detector/alignment/cspad/Dg4Cspad_ami_20141217_geo.1e000a00.dat |
...
Camera History
Camera1_V16_20140924
...
- Metrology file:
- Out of vacuum camera typically used in XPP and XCS.
- 2014-12-17 -- Used in CXI at DG4 location in December 2014.
- XCS concentrator
- D50 MPOD power
- Detector quads rotated 90 deg
- src = 'DetInfo(CxiDg4.0:Cspad.0)'
- Relative detector Z position:
- alias = 'Dg4CsPad_z'
- pv = 'CXI:DG4:MMS:16.RBV '
References
Documentation on data formats
...
- cheetah - github, Anton Barty
- dxtbx-the diffraction experiment toolbox, Aaron Brewster
- XFEL Detectors and ImageCIF
- Diffraction Geometry, D.J.Thomas
- Calibration Management Tool (calibman)
- CSPAD Alignment - alignment summary
- psgeom - T.J. Lane converter between geometry formats in github
MEC
NOTE: When a new geometry is available it is important for the MEC people to update the appropriate mecana file which has a list of "current" geometries. An example filename with this information is /reg/g/pcds/package/mecana/mecana-0.0.8/mecana/cspaddata.py
Geometries
Date | Who uploaded | Experiment | Geometry File Name | File Type | DAQ "Source" Name (Ds1/Ds2) | Front/Back | Camera | Comment |
---|---|---|---|---|---|---|---|---|
2017-10-20 | dubrovin | valid after 2017/10/20 |
valid after 2017/10/20
<PATHREPO>/detector/alignment/cspad/calib-mec-2017-10-20/calib/CsPad::CalibV1/MecTargetChamber.0:Cspad.0/geometry/0-end.data | psana | MecTargetChamber.0:Cspad.0 | Gabriel replaced two 2x2s in Q1 and all four in Q2. See details. | |||||
2017-04-22 | dubrovin | valid after 04/22/217 | <PATHREPO>/detector/alignment/cspad/calib-mec-2017-04-22/calib/CsPad::CalibV1/MecTargetChamber.0:Cspad.0/geometry/1-end.data-2017-04-22-CSPAD-MEC-After | psana | MecTargetChamber.0:Cspad.0 | New metrology for quads from Gabriel Blaj | ||
2017-04-22 | dubrovin | valid before 04/19/2017 | <PATHREPO>/detector/alignment/cspad/calib-mec-2017-04-22/calib/CsPad::CalibV1/MecTargetChamber.0:Cspad.0/geometry/0-end.data-2017-04-19-CSPAD-MEC-Before-corr | psana | MecTargetChamber.0:Cspad.0 | New metrology for quads from Gabriel Blaj | ||
2016-04-21 | dubrovin | from 04/21 2016 | <PATHREPO> |
/detector/alignment/cspad/calib-mec- |
2016- |
04- |
21/calib/CsPad::CalibV1/MecTargetChamber.0:Cspad.0/geometry/0-end.data | psana | MecTargetChamber.0:Cspad.0 |
2016-02-16 | dubrovin | from 02/16 to 04/21 2016 | <PATHREPO>/ |
detector/alignment/cspad/calib-mec- |
2016- |
02- |
16/calib/CsPad::CalibV1/MecTargetChamber.0:Cspad.0/geometry/ |
0-end.data |
psana | MecTargetChamber.0:Cspad.0 |
2015-12-14 | <PATHREPO>/detector/alignment/cspad/calib-mec-2016-02-04/geo-2015-12-14.data | psana |
XPP
Geometries
Date | Who uploaded | Experiment | Geometry File Name | File Type | DAQ "Source" Name | Front/Back | Camera | Comment |
---|---|---|---|---|---|---|---|---|
2017-11-03 | dubrovin |
/detector/alignment/cspad/calib- |
xpp-2017- |
11- |
03- |
camera3/calib/CsPad::CalibV1/ |
XppGon.0:Cspad.0/ |
geometry/0-end.data | psana | XppGon |
.0:Cspad.0 |
Camera 3 | camera repaired, | ||
2017-03-24 | cpo/dubrovin | <PATHREPO>/detector/alignment/cspad/calib- |
xpp-2016- |
08-22- |
camera3/calib/CsPad::CalibV1/ |
XppGon.0:Cspad.0/geometry |
/0-end-corr-2017-03-24.data | psana |
XppGon.0:Cspad.0 |
/reg/g/psdm/detector/alignment/cspad/calib-mec-2016-02-04/geo-2015-12-14.data
XPP
Geometries
Cspad | this corrected an error in the optical metrology measurements where the quads were measured in the wrong order, requiring a 90 degree rotation. This camera also moved to XCS and MFX in 2017. | |||||||
2016-11-22 | yoon | xppn3816 | xppn3816.geom, 21-end.data | crystfel / psana | XppEndstation.0:Rayonix.0 | Rayonix | ||
2016-08-22 | dubrovin | <PATHREPO>/ |
Comment
detector/alignment/cspad/calib-xpp-2016-08-22-camera3/calib/CsPad::CalibV1/XppGon.0:Cspad.0/geometry/0-end |
.data | psana | XppGon |
.0:Cspad.0 | ||||||||
2016-08-22 | dubrovin | metrology | XppGon.0:Cspad.0 | Camera 3 | applied to all experiments taken after August 19 , 2016 | |||
2013-10-09 | dubrovin |
detector/alignment/cspad/calib-xpp- |
2013- |
10- |
09/calib/CsPad::CalibV1/XppGon.0:Cspad.0/geometry/0-end.data | psana | XppGon.0:Cspad |
.0 | ||||
2013-10-09 | dubrovin | metrology |
XppGon.0:Cspad.0 |
dubrovin
applied to all experiments taken after August
19
,
2016
Camera 3 |
MFX
Geometries
Date | Who uploaded | Experiment | Geometry File Name | File Type | DAQ "Source" Name | Front/Back | Camera | Comment |
---|---|---|---|---|---|---|---|---|
2020-09-17 | yoon | mfxc00118 | psana / crystfel | MfxEndstation.0:Epix10ka2M.0 | epix10k2M | Epix10ka2M | Geometry based on lysozyme (indexing rate: 11%) and silver behenate | ||
See 2017-03-24 entry in XPP | ||||||||
2016-11-22 | yoon | crystfel / psana | MfxEndstation.0:Rayonix.0 | Rayonix | Psana detector centred in x,y,z using psocake. Converted to crystfel geometry using psgeom. | |||
2017-02-21 | yoon | mfxn1116 | mfxn1116_v5a.geom | crystfel | MfxEndstation |
/reg/g/psdm/detector/alignment/cspad/calib-xpp-2013-10-09/calib/CsPad::CalibV1/XppGon.0:Cspad.0/geometry/0-end.data
.0:Cspad.0 |
dubrovin
MFX
Geometries
Cspad | Geoptimized geometry courtesy of Oleksandr Yefanov. This was a Cspad borrowed from XPP. | |||||||
2020-08-25 | yoon | mfxc00318 | 1-end.data | psana | MfxEndstation.0:Epix10ka2M.0 | epix10k2M | Epix10ka2M | Recentered on lysozyme rings using Psocake | |
2021-05-17 | cpo/brewster | mfxlv4318 | epix_run23.expt | dials | epix10k2M | From /reg/d/psdm/mfx/mfxlv4318/results/common/geom/epix_run23.expt |
AMO
Geometries
Date | Who uploaded | Experiment | Geometry File Name | File Type | DAQ "Source" Name |
---|
Comment
Front/Back | Camera | Comment | ||||||
---|---|---|---|---|---|---|---|---|
2017-06-16 | yoon | crystfel | pnCCD | Optimized with hdfsee |
References
- Some slides on SPI pnCCD geometry
- CSPAD Alignment
- CSPAD Geometry and Alignment
- Detector Geometry
- CSPad metrology and calibration files, links
- Calibration Management Tool
...