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2.7.8
Starting to try Anaconda Python distribution: Anaconda-2.1.0-Linux-x86_64.sh
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Anaconda2-4.2.0
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Python 2.7.12 :: Continuum Analytics, Inc.
creating default environment... |
- pip install pyfits (3.4)
- pip install pywcs (1.12)
- pip install APLpy (1.1.1) which requires astropy
4Suite-XML 1.0.2, using the tarball available and then run: python setup.py installskipped since 4Suite-XML would not installpywcsgrid2-0.1b2 tarball should be within our GLAST_EXT area
extractcd
python setup.py install
- conda install -c conda-forge healpy (1.9.1-np111py27_0)
- pmw
- wcsaxes (0.6-py27_0) http://wcsaxes.readthedocs.org/en/latest/installation.html
conda install -c openastronomy wcsaxes
2.7.12
Started with Anaconda2-4.0.0.sh, which install python 2.7.11, however installing healpy via conda results in an upgrade to python 2.7.12
2.7.11 (never officially released)
Anaconda Python (python 2.7.11)
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[/u/gl/heather/anaconda2] >>> /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat6-x86_64-64bit-gcc44/python/2.7.11
PREFIX=/afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat6-x86_64-64bit-gcc44/python/2.7.11
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installing: freetype-2.5.5-0 ...
installing: funcsigs-0.4-py27_0 ...
installing: futures-3.0.3-py27_0 ...
installing: gevent-1.1.0-py27_0 ...
installing: greenlet-0.4.9-py27_0 ...
installing: grin-1.2.1-py27_1 ...
installing: h5py-2.5.0-np110py27_4 ...
installing: hdf5-1.8.15.1-2 ...
installing: heapdict-1.0.0-py27_0 ...
installing: idna-2.0-py27_0 ...
installing: ipaddress-1.0.14-py27_0 ...
installing: ipykernel-4.3.1-py27_0 ...
installing: ipython-4.1.2-py27_1 ...
installing: ipython_genutils-0.1.0-py27_0 ...
installing: ipywidgets-4.1.1-py27_0 ...
installing: itsdangerous-0.24-py27_0 ...
installing: jbig-2.1-0 ...
installing: jdcal-1.2-py27_0 ...
installing: jedi-0.9.0-py27_0 ...
installing: jinja2-2.8-py27_0 ...
installing: jpeg-8d-0 ...
installing: jsonschema-2.4.0-py27_0 ...
installing: jupyter-1.0.0-py27_2 ...
installing: jupyter_client-4.2.2-py27_0 ...
installing: jupyter_console-4.1.1-py27_0 ...
installing: jupyter_core-4.1.0-py27_0 ...
installing: libdynd-0.7.2-0 ...
installing: libffi-3.0.13-0 ...
installing: libgfortran-3.0-0 ...
installing: libpng-1.6.17-0 ...
installing: libsodium-1.0.3-0 ...
installing: libtiff-4.0.6-1 ...
installing: libxml2-2.9.2-0 ...
installing: libxslt-1.1.28-0 ...
installing: llvmlite-0.9.0-py27_0 ...
installing: locket-0.2.0-py27_0 ...
installing: lxml-3.6.0-py27_0 ...
installing: markupsafe-0.23-py27_0 ...
installing: matplotlib-1.5.1-np110py27_0 ...
installing: mistune-0.7.2-py27_0 ...
installing: mkl-11.3.1-0 ...
installing: mkl-service-1.1.2-py27_0 ...
installing: mpmath-0.19-py27_0 ...
installing: multipledispatch-0.4.8-py27_0 ...
installing: nbconvert-4.1.0-py27_0 ...
installing: nbformat-4.0.1-py27_0 ...
installing: networkx-1.11-py27_0 ...
installing: nltk-3.2-py27_0 ...
installing: nose-1.3.7-py27_0 ...
installing: notebook-4.1.0-py27_1 ...
installing: numba-0.24.0-np110py27_0 ...
installing: numexpr-2.5-np110py27_0 ...
installing: numpy-1.10.4-py27_1 ...
installing: odo-0.4.2-py27_0 ...
installing: openpyxl-2.3.2-py27_0 ...
installing: openssl-1.0.2g-0 ...
installing: pandas-0.18.0-np110py27_0 ...
installing: partd-0.3.2-py27_1 ...
installing: patchelf-0.8-0 ...
installing: path.py-8.1.2-py27_1 ...
installing: patsy-0.4.0-np110py27_0 ...
installing: pep8-1.7.0-py27_0 ...
installing: pexpect-4.0.1-py27_0 ...
installing: pickleshare-0.5-py27_0 ...
installing: pillow-3.1.1-py27_0 ...
installing: pip-8.1.1-py27_1 ...
installing: pixman-0.32.6-0 ...
installing: ply-3.8-py27_0 ...
installing: psutil-4.1.0-py27_0 ...
installing: ptyprocess-0.5-py27_0 ...
installing: py-1.4.31-py27_0 ...
installing: pyasn1-0.1.9-py27_0 ...
installing: pycairo-1.10.0-py27_0 ...
installing: pycosat-0.6.1-py27_0 ...
installing: pycparser-2.14-py27_0 ...
installing: pycrypto-2.6.1-py27_0 ...
installing: pycurl-7.19.5.3-py27_0 ...
installing: pyflakes-1.1.0-py27_0 ...
installing: pygments-2.1.1-py27_0 ...
installing: pyopenssl-0.15.1-py27_2 ...
installing: pyparsing-2.0.3-py27_0 ...
installing: pyqt-4.11.4-py27_1 ...
installing: pytables-3.2.2-np110py27_1 ...
installing: pytest-2.8.5-py27_0 ...
installing: python-dateutil-2.5.1-py27_0 ...
installing: pytz-2016.2-py27_0 ...
installing: pyyaml-3.11-py27_1 ...
installing: pyzmq-15.2.0-py27_0 ...
installing: qt-4.8.7-1 ...
installing: qtawesome-0.3.2-py27_0 ...
installing: qtconsole-4.2.0-py27_0 ...
installing: qtpy-1.0-py27_0 ...
installing: readline-6.2-2 ...
installing: redis-2.6.9-0 ...
installing: redis-py-2.10.3-py27_0 ...
installing: requests-2.9.1-py27_0 ...
installing: rope-0.9.4-py27_1 ...
installing: scikit-image-0.12.3-np110py27_0 ...
installing: scikit-learn-0.17.1-np110py27_0 ...
installing: scipy-0.17.0-np110py27_2 ...
installing: setuptools-20.3-py27_0 ...
installing: simplegeneric-0.8.1-py27_0 ...
installing: singledispatch-3.4.0.3-py27_0 ...
installing: sip-4.16.9-py27_0 ...
installing: six-1.10.0-py27_0 ...
installing: snowballstemmer-1.2.1-py27_0 ...
installing: sockjs-tornado-1.0.1-py27_0 ...
installing: sphinx-1.3.5-py27_0 ...
installing: sphinx_rtd_theme-0.1.9-py27_0 ...
installing: spyder-2.3.8-py27_1 ...
installing: sqlalchemy-1.0.12-py27_0 ...
installing: sqlite-3.9.2-0 ...
installing: ssl_match_hostname-3.4.0.2-py27_0 ...
installing: statsmodels-0.6.1-np110py27_0 ...
installing: sympy-1.0-py27_0 ...
installing: terminado-0.5-py27_1 ...
installing: tk-8.5.18-0 ...
installing: toolz-0.7.4-py27_0 ...
installing: tornado-4.3-py27_0 ...
installing: traitlets-4.2.1-py27_0 ...
installing: unicodecsv-0.14.1-py27_0 ...
installing: util-linux-2.21-0 ...
installing: werkzeug-0.11.4-py27_0 ...
installing: wheel-0.29.0-py27_0 ...
installing: xlrd-0.9.4-py27_0 ...
installing: xlsxwriter-0.8.4-py27_0 ...
installing: xlwt-1.0.0-py27_0 ...
installing: xz-5.0.5-1 ...
installing: yaml-0.1.6-0 ...
installing: zeromq-4.1.3-0 ...
installing: zlib-1.2.8-0 ...
installing: anaconda-4.0.0-np110py27_0 ...
installing: conda-4.0.5-py27_0 ...
installing: conda-build-1.20.0-py27_0 ...
installing: conda-env-2.4.5-py27_0 ...
Python 2.7.11 :: Continuum Analytics, Inc.
creating default environment...
installation finished. |
- pip install pyfits (3.4)
- pip install pywcs (1.12)
- pip install APLpy (1.0) which requires astropy
- 4Suite-XML 1.0.2, using the tarball available and then run: python setup.py install
pywcsgrid2-0.1b2 tarball should be within our GLAST_EXT area
extractcd
python setup.py install
- conda install -c conda-forge healpy (1.9.1)
- pmw
- wcsaxes (0.6-py27_0) http://wcsaxes.readthedocs.org/en/latest/installation.html
conda install -c openastronomy wcsaxes
2.7.10
Trying Anaconda Python 2.3.0, which installs python 2.7.10
| Panel |
|---|
installing: python-2.7.10-0 ... installing: conda-3.14.1-py27_0 ... installing: conda-build-1.14.1-py27_0 ... installing: conda-env-2.2.3-py27_0 ... installing: _license-1.1-py27_0 ... installing: abstract-rendering-0.5.1-np19py27_0 ... installing: alabaster-0.7.3-py27_0 ... installing: argcomplete-0.8.9-py27_0 ... installing: astropy-1.0.3-np19py27_0 ... installing: babel-1.3-py27_0 ... installing: bcolz-0.9.0-np19py27_0 ... installing: beautiful-soup-4.3.2-py27_0 ... installing: binstar-0.11.0-py27_0 ... installing: bitarray-0.8.1-py27_0 ... installing: blaze-core-0.8.0-np19py27_0 ... installing: blz-0.6.2-np19py27_1 ... installing: bokeh-0.9.0-np19py27_0 ... installing: boto-2.38.0-py27_0 ... installing: bottleneck-1.0.0-np19py27_0 ... installing: cairo-1.12.18-4 ... installing: cdecimal-2.3-py27_0 ... installing: certifi-14.05.14-py27_0 ... installing: cffi-1.1.0-py27_0 ... installing: clyent-0.3.4-py27_0 ... installing: colorama-0.3.3-py27_0 ... installing: configobj-5.0.6-py27_0 ... installing: cryptography-0.9.1-py27_0 ... installing: curl-7.43.0-0 ... installing: cython-0.22.1-py27_0 ... installing: cytoolz-0.7.3-py27_0 ... installing: datashape-0.4.5-np19py27_0 ... installing: decorator-3.4.2-py27_0 ... installing: docutils-0.12-py27_0 ... installing: dynd-python-0.6.5-np19py27_0 ... installing: enum34-1.0.4-py27_0 ... installing: fastcache-1.0.2-py27_0 ... installing: flask-0.10.1-py27_1 ... installing: fontconfig-2.11.1-4 ... installing: freetype-2.5.2-2 ... installing: funcsigs-0.4-py27_0 ... installing: gevent-1.0.1-py27_0 ... installing: gevent-websocket-0.9.3-py27_0 ... installing: greenlet-0.4.7-py27_0 ... installing: grin-1.2.1-py27_1 ... installing: h5py-2.5.0-np19py27_3 ... installing: hdf5-1.8.15.1-1 ... installing: idna-2.0-py27_0 ... installing: ipaddress-1.0.7-py27_0 ... installing: ipython-3.2.0-py27_0 ... installing: ipython-notebook-3.2.0-py27_0 ... installing: ipython-qtconsole-3.2.0-py27_0 ... installing: itsdangerous-0.24-py27_0 ... installing: jdcal-1.0-py27_0 ... installing: jedi-0.8.1-py27_0 ... installing: jinja2-2.7.3-py27_1 ... installing: jpeg-8d-0 ... installing: jsonschema-2.4.0-py27_0 ... installing: libdynd-0.6.5-0 ... installing: libffi-3.0.13-0 ... installing: libpng-1.6.17-0 ... installing: libsodium-0.4.5-0 ... installing: libtiff-4.0.2-1 ... installing: libxml2-2.9.2-0 ... installing: libxslt-1.1.28-0 ... installing: llvmlite-0.5.0-py27_0 ... installing: lxml-3.4.4-py27_0 ... installing: markupsafe-0.23-py27_0 ... installing: matplotlib-1.4.3-np19py27_2 ... installing: mistune-0.5.1-py27_1 ... installing: mock-1.0.1-py27_0 ... installing: multipledispatch-0.4.7-py27_0 ... installing: networkx-1.9.1-py27_0 ... installing: nltk-3.0.3-np19py27_0 ... installing: nose-1.3.7-py27_0 ... installing: numba-0.19.1-np19py27_0 ... installing: numexpr-2.4.3-np19py27_0 ... installing: numpy-1.9.2-py27_0 ... installing: odo-0.3.2-np19py27_0 ... installing: openpyxl-1.8.5-py27_0 ... installing: openssl-1.0.1k-1 ... installing: pandas-0.16.2-np19py27_0 ... installing: patsy-0.3.0-np19py27_0 ... installing: pep8-1.6.2-py27_0 ... installing: pillow-2.8.2-py27_0 ... installing: pip-7.0.3-py27_0 ... installing: pixman-0.26.2-0 ... installing: ply-3.6-py27_0 ... installing: psutil-2.2.1-py27_0 ... installing: ptyprocess-0.4-py27_0 ... installing: py-1.4.27-py27_0 ... installing: py2cairo-1.10.0-py27_2 ... installing: pyasn1-0.1.7-py27_0 ... installing: pycosat-0.6.1-py27_0 ... installing: pycparser-2.14-py27_0 ... installing: pycrypto-2.6.1-py27_0 ... installing: pycurl-7.19.5.1-py27_2 ... installing: pyflakes-0.9.2-py27_0 ... installing: pygments-2.0.2-py27_0 ... installing: pyopenssl-0.15.1-py27_1 ... installing: pyparsing-2.0.3-py27_0 ... installing: pyqt-4.11.3-py27_1 ... installing: pytables-3.2.0-np19py27_0 ... installing: pytest-2.7.1-py27_0 ... installing: python-dateutil-2.4.2-py27_0 ... installing: pytz-2015.4-py27_0 ... installing: pyyaml-3.11-py27_1 ... installing: pyzmq-14.7.0-py27_0 ... installing: qt-4.8.6-3 ... installing: readline-6.2-2 ... installing: redis-2.6.9-0 ... installing: redis-py-2.10.3-py27_0 ... installing: requests-2.7.0-py27_0 ... installing: rope-0.9.4-py27_1 ... installing: runipy-0.1.3-py27_0 ... installing: scikit-image-0.11.3-np19py27_0 ... installing: scikit-learn-0.16.1-np19py27_0 ... installing: scipy-0.15.1-np19py27_0 ... installing: setuptools-17.1.1-py27_0 ... installing: sip-4.16.5-py27_0 ... installing: six-1.9.0-py27_0 ... installing: snowballstemmer-1.2.0-py27_0 ... installing: sockjs-tornado-1.0.1-py27_0 ... installing: sphinx-1.3.1-py27_0 ... installing: sphinx_rtd_theme-0.1.7-py27_0 ... installing: spyder-2.3.5.2-py27_0 ... installing: spyder-app-2.3.5.2-py27_0 ... installing: sqlalchemy-1.0.5-py27_0 ... installing: sqlite-3.8.4.1-1 ... installing: ssl_match_hostname-3.4.0.2-py27_0 ... installing: statsmodels-0.6.1-np19py27_0 ... installing: sympy-0.7.6-py27_0 ... installing: system-5.8-2 ... installing: terminado-0.5-py27_0 ... installing: theano-0.7.0-np19py27_0 ... installing: tk-8.5.18-0 ... installing: toolz-0.7.2-py27_0 ... installing: tornado-4.2-py27_0 ... installing: ujson-1.33-py27_0 ... installing: unicodecsv-0.9.4-py27_0 ... installing: util-linux-2.21-0 ... installing: werkzeug-0.10.4-py27_0 ... installing: xlrd-0.9.3-py27_0 ... installing: xlsxwriter-0.7.3-py27_0 ... installing: xlwt-1.0.0-py27_0 ... installing: yaml-0.1.6-0 ... installing: zeromq-4.0.5-0 ... installing: zlib-1.2.8-0 ... installing: anaconda-2.3.0-np19py27_0 ... installing: _cache-0.0-x0 ... Python 2.7.10 :: Continuum Analytics, Inc. creating default environment... linktype: copy linking: _cache-0.0-x0 linking: _license-1.1-py27_0 linking: abstract-rendering-0.5.1-np19py27_0 linking: alabaster-0.7.3-py27_0 linking: anaconda-2.3.0-np19py27_0 linking: argcomplete-0.8.9-py27_0 linking: astropy-1.0.3-np19py27_0 linking: babel-1.3-py27_0 linking: bcolz-0.9.0-np19py27_0 linking: beautiful-soup-4.3.2-py27_0 linking: binstar-0.11.0-py27_0 linking: bitarray-0.8.1-py27_0 linking: blaze-core-0.8.0-np19py27_0 linking: blz-0.6.2-np19py27_1 linking: bokeh-0.9.0-np19py27_0 linking: boto-2.38.0-py27_0 linking: bottleneck-1.0.0-np19py27_0 linking: cairo-1.12.18-4 linking: cdecimal-2.3-py27_0 linking: certifi-14.05.14-py27_0 linking: cffi-1.1.0-py27_0 linking: clyent-0.3.4-py27_0 linking: colorama-0.3.3-py27_0 linking: conda-3.14.1-py27_0 linking: conda-build-1.14.1-py27_0 linking: conda-env-2.2.3-py27_0 linking: configobj-5.0.6-py27_0 linking: cryptography-0.9.1-py27_0 linking: curl-7.43.0-0 linking: cython-0.22.1-py27_0 linking: cytoolz-0.7.3-py27_0 linking: datashape-0.4.5-np19py27_0 linking: decorator-3.4.2-py27_0 linking: docutils-0.12-py27_0 linking: dynd-python-0.6.5-np19py27_0 linking: enum34-1.0.4-py27_0 linking: fastcache-1.0.2-py27_0 linking: flask-0.10.1-py27_1 linking: fontconfig-2.11.1-4 linking: freetype-2.5.2-2 linking: funcsigs-0.4-py27_0 linking: gevent-1.0.1-py27_0 linking: gevent-websocket-0.9.3-py27_0 linking: greenlet-0.4.7-py27_0 linking: grin-1.2.1-py27_1 linking: h5py-2.5.0-np19py27_3 linking: hdf5-1.8.15.1-1 linking: idna-2.0-py27_0 linking: ipaddress-1.0.7-py27_0 linking: ipython-3.2.0-py27_0 linking: ipython-notebook-3.2.0-py27_0 linking: ipython-qtconsole-3.2.0-py27_0 linking: itsdangerous-0.24-py27_0 linking: jdcal-1.0-py27_0 linking: jedi-0.8.1-py27_0 linking: jinja2-2.7.3-py27_1 linking: jpeg-8d-0 linking: jsonschema-2.4.0-py27_0 linking: libdynd-0.6.5-0 linking: libffi-3.0.13-0 linking: libpng-1.6.17-0 linking: libsodium-0.4.5-0 linking: libtiff-4.0.2-1 linking: libxml2-2.9.2-0 linking: libxslt-1.1.28-0 linking: llvmlite-0.5.0-py27_0 linking: lxml-3.4.4-py27_0 linking: markupsafe-0.23-py27_0 linking: matplotlib-1.4.3-np19py27_2 linking: mistune-0.5.1-py27_1 linking: mock-1.0.1-py27_0 linking: multipledispatch-0.4.7-py27_0 linking: networkx-1.9.1-py27_0 linking: nltk-3.0.3-np19py27_0 linking: nose-1.3.7-py27_0 linking: numba-0.19.1-np19py27_0 linking: numexpr-2.4.3-np19py27_0 linking: numpy-1.9.2-py27_0 linking: odo-0.3.2-np19py27_0 linking: openpyxl-1.8.5-py27_0 linking: openssl-1.0.1k-1 linking: pandas-0.16.2-np19py27_0 linking: patsy-0.3.0-np19py27_0 linking: pep8-1.6.2-py27_0 linking: pillow-2.8.2-py27_0 linking: pip-7.0.3-py27_0 linking: pixman-0.26.2-0 linking: ply-3.6-py27_0 linking: psutil-2.2.1-py27_0 linking: ptyprocess-0.4-py27_0 linking: py-1.4.27-py27_0 linking: py2cairo-1.10.0-py27_2 linking: pyasn1-0.1.7-py27_0 linking: pycosat-0.6.1-py27_0 linking: pycparser-2.14-py27_0 linking: pycrypto-2.6.1-py27_0 linking: pycurl-7.19.5.1-py27_2 linking: pyflakes-0.9.2-py27_0 linking: pygments-2.0.2-py27_0 linking: pyopenssl-0.15.1-py27_1 linking: pyparsing-2.0.3-py27_0 linking: pyqt-4.11.3-py27_1 linking: pytables-3.2.0-np19py27_0 linking: pytest-2.7.1-py27_0 linking: python-2.7.10-0 linking: python-dateutil-2.4.2-py27_0 linking: pytz-2015.4-py27_0 linking: pyyaml-3.11-py27_1 linking: pyzmq-14.7.0-py27_0 linking: qt-4.8.6-3 linking: readline-6.2-2 linking: redis-2.6.9-0 linking: redis-py-2.10.3-py27_0 linking: requests-2.7.0-py27_0 linking: rope-0.9.4-py27_1 linking: runipy-0.1.3-py27_0 linking: scikit-image-0.11.3-np19py27_0 linking: scikit-learn-0.16.1-np19py27_0 linking: scipy-0.15.1-np19py27_0 linking: setuptools-17.1.1-py27_0 linking: sip-4.16.5-py27_0 linking: six-1.9.0-py27_0 linking: snowballstemmer-1.2.0-py27_0 linking: sockjs-tornado-1.0.1-py27_0 linking: sphinx-1.3.1-py27_0 linking: sphinx_rtd_theme-0.1.7-py27_0 linking: spyder-2.3.5.2-py27_0 linking: spyder-app-2.3.5.2-py27_0 linking: sqlalchemy-1.0.5-py27_0 linking: sqlite-3.8.4.1-1 linking: ssl_match_hostname-3.4.0.2-py27_0 linking: statsmodels-0.6.1-np19py27_0 linking: sympy-0.7.6-py27_0 linking: system-5.8-2 linking: terminado-0.5-py27_0 linking: theano-0.7.0-np19py27_0 linking: tk-8.5.18-0 linking: toolz-0.7.2-py27_0 linking: tornado-4.2-py27_0 linking: ujson-1.33-py27_0 linking: unicodecsv-0.9.4-py27_0 linking: util-linux-2.21-0 linking: werkzeug-0.10.4-py27_0 linking: xlrd-0.9.3-py27_0 linking: xlsxwriter-0.7.3-py27_0 linking: xlwt-1.0.0-py27_0 linking: yaml-0.1.6-0 linking: zeromq-4.0.5-0 linking: zlib-1.2.8-0 installation finished. |
Still need to install pyfits, healpy, pmwcs
after Anaconda installation is finished, add bin directory to your PATH and then install additional packages needed for Fermi:
- pip install pyfits (3.4)
- pip install pywcs (1.12)
- pip install APLpy (0.9.14) which requires astropy
- 4Suite-XML 1.0.2, using the tarball available and then run: python setup.py install
pywcsgrid2-0.1b2 tarball should be within our GLAST_EXT area
extractcd
python setup.py install
- pip install healpy (1.8.4)
- pmw
- wcsaxes http://wcsaxes.readthedocs.org/en/latest/installation.html
pip install wcsaxes - jupyter
redhat7
pip install pyfits (3.4)
pip install pywcs (1.12)
APLpy 0.9.14 from source via python setup.py install
| Panel | ||
|---|---|---|
| ||
The following packages will be UPDATED:
astropy: 1.0.3-np19py27_0 --> 1.1.2-np110py27_0 (soft-link) conda: 3.14.1-py27_0 --> 4.0.5-py27_0 (soft-link) conda-env: 2.2.3-py27_0 --> 2.4.5-py27_0 (soft-link) numpy: 1.9.2-py27_0 --> 1.10.4-py27_1 (soft-link) openssl: 1.0.1k-1 --> 1.0.2g-0 (soft-link) pip: 7.0.3-py27_0 --> 8.1.1-py27_0 (soft-link) python: 2.7.10-0 --> 2.7.11-0 (soft-link) requests: 2.7.0-py27_0 --> 2.9.1-py27_0 (soft-link) setuptools: 17.1.1-py27_0 --> 20.3-py27_0 (soft-link) sqlite: 3.8.4.1-1 --> 3.9.2-0 (soft-link)
|
- 4Suite-XML 1.0.2, using the tarball available and then run: python setup.py install
pywcsgrid2-0.1b2 tarball should be within our GLAST_EXT area
extractcd
python setup.py install
- pip install healpy (1.9.1)
- pmw
Pmw 1.3.3
Home page: http://pmw.sourceforge.net/
Note Pmw 2.0.0 is for Python 3.0 while the 1.3 series is meant for Python 2.x. The Pmw-2.0.0 tarball includes both versions and during the installation chooses the correct one to install based on the version of python.
- Download the source code from: http://sourceforge.net/projects/pmw/files/
- Unpack the tarball
- python setup.py install
- Test by running: python All.py in the site-packages/Pmw/Pmw_1_3_3/tests directory
2.7.8
Starting to try Anaconda Python distribution: Anaconda-2.1.0-Linux-x86_64.sh
[/u/gl/heather/anaconda] >>> /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat6-x86_64-64bit-gcc44/python/2.7.8
PREFIX=/afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat6-x86_64-64bit-gcc44/python/2.7.8
installing: python-2.7.8-1 ...
installing: conda-3.7.0-py27_0 ...
installing: conda-build-1.8.2-py27_0 ...
installing: _license-1.1-py27_0 ...
installing: abstract-rendering-0.5.1-np19py27_0 ...
installing: argcomplete-0.8.1-py27_0 ...
installing: astropy-0.4.2-np19py27_0 ...
installing: atom-0.3.9-py27_0 ...
installing: beautiful-soup-4.3.2-py27_0 ...
installing: binstar-0.7.1-py27_0 ...
installing: bitarray-0.8.1-py27_0 ...
installing: blaze-0.6.3-np19py27_0 ...
installing: blz-0.6.2-np19py27_0 ...
installing: bokeh-0.6.1-np19py27_0 ...
installing: boto-2.32.1-py27_0 ...
installing: cairo-1.12.2-2 ...
installing: casuarius-1.1-py27_0 ...
installing: cdecimal-2.3-py27_0 ...
installing: cffi-0.8.6-py27_0 ...
installing: chaco-4.4.1-np19py27_0 ...
installing: colorama-0.3.1-py27_0 ...
installing: configobj-5.0.6-py27_0 ...
installing: cryptography-0.5.4-py27_0 ...
installing: curl-7.38.0-0 ...
installing: cython-0.21-py27_0 ...
installing: cytoolz-0.7.0-py27_0 ...
installing: datashape-0.3.0-np19py27_1 ...
installing: dateutil-2.1-py27_2 ...
installing: decorator-3.4.0-py27_0 ...
installing: docutils-0.12-py27_0 ...
installing: dynd-python-0.6.5-np19py27_0 ...
installing: enable-4.3.0-np19py27_2 ...
installing: enaml-0.9.8-py27_0 ...
installing: flask-0.10.1-py27_1 ...
installing: freetype-2.4.10-0 ...
installing: future-0.13.1-py27_0 ...
installing: futures-2.1.6-py27_0 ...
installing: gevent-1.0.1-py27_0 ...
installing: gevent-websocket-0.9.3-py27_0 ...
installing: greenlet-0.4.4-py27_0 ...
installing: grin-1.2.1-py27_1 ...
installing: h5py-2.3.1-np19py27_0 ...
installing: hdf5-1.8.13-0 ...
installing: ipython-2.2.0-py27_0 ...
installing: ipython-notebook-2.2.0-py27_0 ...
installing: ipython-qtconsole-2.2.0-py27_0 ...
installing: itsdangerous-0.24-py27_0 ...
installing: jdcal-1.0-py27_0 ...
installing: jinja2-2.7.3-py27_1 ...
installing: jpeg-8d-0 ...
installing: kiwisolver-0.1.3-py27_0 ...
installing: lcms-1.19-0 ...
installing: libdynd-0.6.5-0 ...
installing: libffi-3.0.13-0 ...
installing: libpng-1.5.13-1 ...
installing: libsodium-0.4.5-0 ...
installing: libtiff-4.0.2-1 ...
installing: libxml2-2.9.0-0 ...
installing: libxslt-1.1.28-0 ...
installing: llvm-3.3-0 ...
installing: llvmpy-0.12.7-py27_0 ...
installing: lxml-3.4.0-py27_0 ...
installing: markupsafe-0.23-py27_0 ...
installing: matplotlib-1.4.0-np19py27_0 ...
installing: mock-1.0.1-py27_0 ...
installing: mpi4py-1.3-py27_0 ...
installing: mpich2-1.4.1p1-0 ...
installing: multipledispatch-0.4.7-py27_0 ...
installing: networkx-1.9.1-py27_0 ...
installing: nltk-3.0.0-np19py27_0 ...
installing: nose-1.3.4-py27_0 ...
installing: numba-0.14.0-np19py27_0 ...
installing: numexpr-2.3.1-np19py27_0 ...
installing: numpy-1.9.0-py27_0 ...
installing: openpyxl-1.8.5-py27_0 ...
installing: openssl-1.0.1h-1 ...
installing: pandas-0.14.1-np19py27_0 ...
installing: patsy-0.3.0-np19py27_0 ...
installing: pep8-1.5.7-py27_0 ...
installing: pil-1.1.7-py27_1 ...
installing: pip-1.5.6-py27_0 ...
installing: pixman-0.26.2-0 ...
installing: ply-3.4-py27_0 ...
installing: psutil-2.1.1-py27_0 ...
installing: py-1.4.25-py27_0 ...
installing: py2cairo-1.10.0-py27_1 ...
installing: pycosat-0.6.1-py27_0 ...
installing: pycparser-2.10-py27_0 ...
installing: pycrypto-2.6.1-py27_0 ...
installing: pycurl-7.19.5-py27_1 ...
installing: pyface-4.4.0-py27_0 ...
installing: pyflakes-0.8.1-py27_0 ...
installing: pygments-1.6-py27_0 ...
installing: pyopenssl-0.14-py27_0 ...
installing: pyparsing-2.0.1-py27_0 ...
installing: pyqt-4.10.4-py27_0 ...
installing: pytables-3.1.1-np19py27_1 ...
installing: pytest-2.6.3-py27_0 ...
installing: pytz-2014.7-py27_0 ...
installing: pyyaml-3.11-py27_0 ...
installing: pyzmq-14.3.1-py27_0 ...
installing: qt-4.8.5-0 ...
installing: readline-6.2-2 ...
installing: redis-2.6.9-0 ...
installing: redis-py-2.9.1-py27_0 ...
installing: requests-2.4.1-py27_0 ...
installing: rope-0.9.4-py27_1 ...
installing: runipy-0.1.1-py27_0 ...
installing: scikit-image-0.10.1-np19py27_0 ...
installing: scikit-learn-0.15.2-np19py27_0 ...
installing: scipy-0.14.0-np19py27_0 ...
installing: setuptools-5.8-py27_0 ...
installing: sip-4.15.5-py27_0 ...
installing: six-1.8.0-py27_0 ...
installing: sockjs-tornado-1.0.1-py27_0 ...
installing: sphinx-1.2.3-py27_0 ...
installing: spyder-2.3.1-py27_0 ...
installing: spyder-app-2.3.1-py27_0 ...
installing: sqlalchemy-0.9.7-py27_0 ...
installing: sqlite-3.8.4.1-0 ...
installing: ssl_match_hostname-3.4.0.2-py27_0 ...
installing: statsmodels-0.5.0-np19py27_2 ...
installing: sympy-0.7.5-py27_0 ...
installing: system-5.8-1 ...
installing: theano-0.6.0-np19py27_0 ...
installing: tk-8.5.15-0 ...
installing: toolz-0.7.0-py27_0 ...
installing: tornado-4.0.2-py27_0 ...
installing: traits-4.4.0-py27_0 ...
installing: traitsui-4.4.0-py27_0 ...
installing: ujson-1.33-py27_0 ...
installing: unicodecsv-0.9.4-py27_0 ...
installing: util-linux-2.21-0 ...
installing: werkzeug-0.9.6-py27_1 ...
installing: xlrd-0.9.3-py27_0 ...
installing: xlsxwriter-0.5.7-py27_0 ...
installing: xlwt-0.7.5-py27_0 ...
installing: yaml-0.1.4-0 ...
installing: zeromq-4.0.4-0 ...
installing: zlib-1.2.7-0 ...
installing: anaconda-2.1.0-np19py27_0 ...
installing: _cache-0.0-x0 ...
after Anaconda installation is finished, add bin directory to your PATH and then install additional packages needed for Fermi:
- pip install pyfits (3.3)
- pip install pywcs (1.12)
- pip install APLpy (0.9.14)
- 4Suite-XML 1.0.2,
after Anaconda installation is finished, add bin directory to your PATH and then install additional packages needed for Fermi:
- pip install pyfits (3.3)
- pip install pywcs (1.12)
- pip install APLpy (0.9.14)
- 4Suite-XML 1.0.2, using the tarball available and then run: python setup.py install
pywcsgrid2-0.1b2 tarball should be within our GLAST_EXT area
extractcd
python setup.py install
- pip install healpy (1.8.4)
2.7.6-gl2
| Info |
|---|
Failure so far in numpy install due to missing blas/lapack in /usr/lib. Opened ticket with SLAC unix-admin |
...
redhat6-x86_64bit-gcc44
- Obtain python source from python.org
- Ungzip/Untar source
- Change directory to Python-2.7.6
- Set the environment variable EXTRA_CFLAGS to "-fPIC -fwrapv"
- Change directory to Python-2.7.2
- edit setup.py, in detect_modules() change the lines from:
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
to:
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
add_dir_to_list(self.compiler.library_dirs, '/usr/lib')
add_dir_to_list(self.compiler.include_dirs, '/usr/include') - setenv LDFLAGS -fPIC; setenv CPPFLAGS -fPIC; setenv CFLAGS -m64 -fPIC need to force 64 bit build even on rhel6-64
- Execute ./configure --prefix /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat5-i386-32bit-gcc41/python/2.7.6
- Execute make
- Execute make install
- Leave and erase the current directory (Python-2.7.6)
- Make sure to unset the env variables set up abovecd
pip (also installs setuptools)
...
PyFITS - 3.3
pip install pyfits
matplotlib 1.4.3
...
pip install matplotlib
which also installed tornado, python-dateutil, pyparsing, six, and backport.ssl-match-hostname
pywcs-1.12
pip install pywcspywcsS
astropy-1.0.
...
4
pip install astropy
APLpy-0.9.11 (requires astropy)
...
Download from https://github.com/leejjoon/pywcsgrid2/downloads
Extract
cd
python setup.py install
PyYAML 3.11
/downloads
Extract
cd
python setup.py install
PyYAML 3.11
curl -O http://pyyaml.org/download/pyyaml/PyYAML-3.11.tar.gz
python setup.py install
healpy 1.8.6
see: https://pypi.python.org/pypi/healpy
pip install healpy
virtualenv-13.1.2
https://virtualenv.pypa.io/en/latest/virtualenv.html#installation
pip install virtualenv
How to use: http://docs.python-guide.org/en/latest/dev/virtualenvs/
Pmw 1.3.3
Home page:curl -O http://pyyamlpmw.sourceforge.org/download/pyyaml/PyYAML-3.11.tar.gz
python setup.py install
healpy 1.7.4
see: https://pypi.python.org/pypi/healpy
pip install healpy
virtualenv-1.11.5
https://virtualenv.pypa.io/en/latest/virtualenv.html#installation
pip install virtualenv
How to use: http://docs.python-guide.org/en/latest/dev/virtualenvs/
Pmw 1.3.3
Home page: http://pmw.sourceforge.net/
Note Pmw 2.0.0 is for Python 3.0 while the 1.3 series is meant for Python 2.x. The Pmw-2.0.0 tarball includes both versions and during the installation chooses the correct one to install based on the version of python.
- Download the source code from: http://sourceforge.net/projects/pmw/files/
- Unpack the tarball
- python install setup.py
- Test by running: python All.py in the site-packages/Pmw/Pmw_1_3_3/tests directory
iPython - 2.0.0
We do not distribute IPython any long due to ongoing issues with hard-coded paths associated with IPython. Instead, we manually create the tar.gz file and copy it over to u35, then install IPython for use at SLAC in the GLAST_EXT copy.
pip install ipython
Run the iptest located in python's bin directory.
to support HTML notebooks:
pyzmq
Note Pmw 2.0.0 is for Python 3.0 while the 1.3 series is meant for Python 2.x. The Pmw-2.0.0 tarball includes both versions and during the installation chooses the correct one to install based on the version of python.
- Download the source code from: http://sourceforge.net/projects/pmw/files/
- Unpack the tarball
- python setup.py install
- Test by running: python All.py in the site-packages/Pmw/Pmw_1_3_3/tests directory
iPython - 4.0.0
We do not distribute IPython any long due to ongoing issues with hard-coded paths associated with IPython. Instead, we manually create the tar.gz file and copy it over to u35, then install IPython for use at SLAC in the GLAST_EXT copy.
pip install ipython
Run the iptest located in python's bin directory.
to support HTML notebooks:
pyzmq
zeromq 4.1.3
download from http://zeromq.org/area:download
curl -O http://download.zeromq.org/zeromq-4.1.3.tar.gz
zeromq depends on libsodium https://download.libsodium.org/doc/installation/index.html
curl -O https://download.libsodium.org/libsodium/releases/libsodium-1.0.3.tar.gz
uncompress libsodium.tar.gz
./configure --prefix=location
make && make check
make install
I chose to store the libsodium installation as part of my zeromq install in $GLAST_EXT/zeromq/4.1.3
To build zeromq
./configure --prefix=$GLAST_EXT/zeromq/4.1.3 PKG_CONFIG_PATH=$GLAST_EXT/zeromq/4.1.3/lib/pkgconfig CPPFLAGS=-I$GLAST_EXT/zeromq/4.1.3/include LDFLAGS=-L$GLAST_EXT/zeromq/4.1.3/lib
make
make install
Then install pyzmq 14.7.0:zeromq
download from http://zeromq.org/area:download
./configure --prefix=location
make
make install
pip install pyzmq --install-option="--zmq=$GLAST_EXT/zeromq/4.0.4"
...
PyFITS - 3.2.2
pip install pyfits
matplotlib 1.3.1
pip install matplotlib
which also installed tornado, python-dateutil, pyparsing, six, and backport.ssl-match-hostname
pywcs-1.12
pip install pywcs
astropy-0.3.1
pip install astropy
APLpy-0.9.11 (requires astropy)
...
curl -O http://pyyaml.org/download/pyyaml/PyYAML-3.11.tar.gz
python setup.py install
healpy 1.7.4
see: https://pypi.python.org/pypi/healpy
pip install healpy
virtualenv-1.11.5
https://virtualenv.pypa.io/en/latest/virtualenv.html#installation
...
How to use: http://docs.python-guide.org/en/latest/dev/virtualenvs/
Pmw 1.3.3
Home page: http://pmw.sourceforge.net/
...
- Download the source code from: http://sourceforge.net/projects/pmw/files/
- Unpack the tarball
- python install setup.py
- Test by running: python All.py in the site-packages/Pmw/Pmw_1_3_3/tests directory
iPython - 2.0.0
We do not distribute IPython any long due to ongoing issues with hard-coded paths associated with IPython. Instead, we manually create the tar.gz file and copy it over to u35, then install IPython for use at SLAC in the GLAST_EXT copy.
...
PyFITS - 3.2.2
pip install pyfits
matplotlib 1.3.1
pip install matplotlib
which also installed tornado, python-dateutil, pyparsing, six, and backport.ssl-match-hostname
pywcs-1.12
pip install pywcs
astropy-0.3.1
pip install astropy
APLpy-0.9.11 (requires astropy)
...
curl -O http://pyyaml.org/download/pyyaml/PyYAML-3.11.tar.gz
python setup.py install
healpy 1.7.4
see: https://pypi.python.org/pypi/healpy
pip install healpy
virtualenv-1.11.5
https://virtualenv.pypa.io/en/latest/virtualenv.html#installation
...
How to use: http://docs.python-guide.org/en/latest/dev/virtualenvs/
iPython - 2.0.0
We do not distribute IPython any long due to ongoing issues with hard-coded paths associated with IPython. Instead, we manually create the tar.gz file and copy it over to u35, then install IPython for use at SLAC in the GLAST_EXT copy.
...