installing: python-2.7.12-1 ... installing: _license-1.1-py27_1 ... installing: _nb_ext_conf-0.3.0-py27_0 ... installing: alabaster-0.7.9-py27_0 ... installing: anaconda-clean-1.0.0-py27_0 ... installing: anaconda-client-1.5.1-py27_0 ... installing: anaconda-navigator-1.3.1-py27_0 ... installing: argcomplete-1.0.0-py27_1 ... installing: astroid-1.4.7-py27_0 ... installing: astropy-1.2.1-np111py27_0 ... installing: babel-2.3.4-py27_0 ... installing: backports-1.0-py27_0 ... installing: backports_abc-0.4-py27_0 ... installing: beautifulsoup4-4.5.1-py27_0 ... installing: bitarray-0.8.1-py27_0 ... installing: blaze-0.10.1-py27_0 ... installing: bokeh-0.12.2-py27_0 ... installing: boto-2.42.0-py27_0 ... installing: bottleneck-1.1.0-np111py27_0 ... installing: cairo-1.12.18-6 ... installing: cdecimal-2.3-py27_2 ... installing: cffi-1.7.0-py27_0 ... installing: chest-0.2.3-py27_0 ... installing: click-6.6-py27_0 ... installing: cloudpickle-0.2.1-py27_0 ... installing: clyent-1.2.2-py27_0 ... installing: colorama-0.3.7-py27_0 ... installing: configobj-5.0.6-py27_0 ... installing: configparser-3.5.0-py27_0 ... installing: contextlib2-0.5.3-py27_0 ... installing: cryptography-1.5-py27_0 ... installing: curl-7.49.0-1 ... installing: cycler-0.10.0-py27_0 ... installing: cython-0.24.1-py27_0 ... installing: cytoolz-0.8.0-py27_0 ... installing: dask-0.11.0-py27_0 ... installing: datashape-0.5.2-py27_0 ... installing: dbus-1.10.10-0 ... installing: decorator-4.0.10-py27_0 ... installing: dill-0.2.5-py27_0 ... installing: docutils-0.12-py27_2 ... installing: dynd-python-0.7.2-py27_0 ... installing: entrypoints-0.2.2-py27_0 ... installing: enum34-1.1.6-py27_0 ... installing: et_xmlfile-1.0.1-py27_0 ... installing: expat-2.1.0-0 ... installing: fastcache-1.0.2-py27_1 ... installing: filelock-2.0.6-py27_0 ... installing: flask-0.11.1-py27_0 ... installing: flask-cors-2.1.2-py27_0 ... installing: fontconfig-2.11.1-6 ... installing: freetype-2.5.5-1 ... installing: funcsigs-1.0.2-py27_0 ... installing: functools32-3.2.3.2-py27_0 ... installing: futures-3.0.5-py27_0 ... installing: get_terminal_size-1.0.0-py27_0 ... installing: gevent-1.1.2-py27_0 ... installing: glib-2.43.0-1 ... installing: greenlet-0.4.10-py27_0 ... installing: grin-1.2.1-py27_3 ... installing: gst-plugins-base-1.8.0-0 ... installing: gstreamer-1.8.0-0 ... installing: h5py-2.6.0-np111py27_2 ... installing: harfbuzz-0.9.39-1 ... installing: hdf5-1.8.17-1 ... installing: heapdict-1.0.0-py27_1 ... installing: icu-54.1-0 ... installing: idna-2.1-py27_0 ... installing: imagesize-0.7.1-py27_0 ... installing: ipaddress-1.0.16-py27_0 ... installing: ipykernel-4.5.0-py27_0 ... installing: ipython-5.1.0-py27_0 ... installing: ipython_genutils-0.1.0-py27_0 ... installing: ipywidgets-5.2.2-py27_0 ... installing: itsdangerous-0.24-py27_0 ... installing: jbig-2.1-0 ... installing: jdcal-1.2-py27_1 ... installing: jedi-0.9.0-py27_1 ... installing: jinja2-2.8-py27_1 ... installing: jpeg-8d-2 ... installing: jsonschema-2.5.1-py27_0 ... installing: jupyter-1.0.0-py27_3 ... installing: jupyter_client-4.4.0-py27_0 ... installing: jupyter_console-5.0.0-py27_0 ... installing: jupyter_core-4.2.0-py27_0 ... installing: lazy-object-proxy-1.2.1-py27_0 ... installing: libdynd-0.7.2-0 ... installing: libffi-3.2.1-0 ... installing: libgcc-4.8.5-2 ... installing: libgfortran-3.0.0-1 ... installing: libpng-1.6.22-0 ... installing: libsodium-1.0.10-0 ... installing: libtiff-4.0.6-2 ... installing: libxcb-1.12-0 ... installing: libxml2-2.9.2-0 ... installing: libxslt-1.1.28-0 ... installing: llvmlite-0.13.0-py27_0 ... installing: locket-0.2.0-py27_1 ... installing: lxml-3.6.4-py27_0 ... installing: markupsafe-0.23-py27_2 ... installing: matplotlib-1.5.3-np111py27_0 ... installing: mistune-0.7.3-py27_0 ... installing: mkl-11.3.3-0 ... installing: mkl-service-1.1.2-py27_2 ... installing: mpmath-0.19-py27_1 ... installing: multipledispatch-0.4.8-py27_0 ... installing: nb_anacondacloud-1.2.0-py27_0 ... installing: nb_conda-2.0.0-py27_0 ... installing: nb_conda_kernels-2.0.0-py27_0 ... installing: nbconvert-4.2.0-py27_0 ... installing: nbformat-4.1.0-py27_0 ... installing: nbpresent-3.0.2-py27_0 ... installing: networkx-1.11-py27_0 ... installing: nltk-3.2.1-py27_0 ... installing: nose-1.3.7-py27_1 ... installing: notebook-4.2.3-py27_0 ... installing: numba-0.28.1-np111py27_0 ... installing: numexpr-2.6.1-np111py27_0 ... installing: numpy-1.11.1-py27_0 ... installing: odo-0.5.0-py27_1 ... installing: openpyxl-2.3.2-py27_0 ... installing: openssl-1.0.2j-0 ... installing: pandas-0.18.1-np111py27_0 ... installing: partd-0.3.6-py27_0 ... installing: patchelf-0.9-0 ... installing: path.py-8.2.1-py27_0 ... installing: pathlib2-2.1.0-py27_0 ... installing: patsy-0.4.1-py27_0 ... installing: pep8-1.7.0-py27_0 ... installing: pexpect-4.0.1-py27_0 ... installing: pickleshare-0.7.4-py27_0 ... installing: pillow-3.3.1-py27_0 ... installing: pip-8.1.2-py27_0 ... installing: pixman-0.32.6-0 ... installing: pkginfo-1.3.2-py27_0 ... installing: ply-3.9-py27_0 ... installing: prompt_toolkit-1.0.3-py27_0 ... installing: psutil-4.3.1-py27_0 ... installing: ptyprocess-0.5.1-py27_0 ... installing: py-1.4.31-py27_0 ... installing: pyasn1-0.1.9-py27_0 ... installing: pycairo-1.10.0-py27_0 ... installing: pycosat-0.6.1-py27_1 ... installing: pycparser-2.14-py27_1 ... installing: pycrypto-2.6.1-py27_4 ... installing: pycurl-7.43.0-py27_0 ... installing: pyflakes-1.3.0-py27_0 ... installing: pygments-2.1.3-py27_0 ... installing: pylint-1.5.4-py27_1 ... installing: pyopenssl-16.0.0-py27_0 ... installing: pyparsing-2.1.4-py27_0 ... installing: pyqt-5.6.0-py27_0 ... installing: pytables-3.2.3.1-np111py27_0 ... installing: pytest-2.9.2-py27_0 ... installing: python-dateutil-2.5.3-py27_0 ... installing: pytz-2016.6.1-py27_0 ... installing: pyyaml-3.12-py27_0 ... installing: pyzmq-15.4.0-py27_0 ... installing: qt-5.6.0-0 ... installing: qtawesome-0.3.3-py27_0 ... installing: qtconsole-4.2.1-py27_1 ... installing: qtpy-1.1.2-py27_0 ... installing: readline-6.2-2 ... installing: redis-3.2.0-0 ... installing: redis-py-2.10.5-py27_0 ... installing: requests-2.11.1-py27_0 ... installing: rope-0.9.4-py27_1 ... installing: scikit-image-0.12.3-np111py27_1 ... installing: scikit-learn-0.17.1-np111py27_2 ... installing: scipy-0.18.1-np111py27_0 ... installing: setuptools-27.2.0-py27_0 ... installing: simplegeneric-0.8.1-py27_1 ... installing: singledispatch-3.4.0.3-py27_0 ... installing: sip-4.18-py27_0 ... installing: six-1.10.0-py27_0 ... installing: snowballstemmer-1.2.1-py27_0 ... installing: sockjs-tornado-1.0.3-py27_0 ... installing: sphinx-1.4.6-py27_0 ... installing: spyder-3.0.0-py27_0 ... installing: sqlalchemy-1.0.13-py27_0 ... installing: sqlite-3.13.0-0 ... installing: ssl_match_hostname-3.4.0.2-py27_1 ... installing: statsmodels-0.6.1-np111py27_1 ... installing: sympy-1.0-py27_0 ... installing: terminado-0.6-py27_0 ... installing: tk-8.5.18-0 ... installing: toolz-0.8.0-py27_0 ... installing: tornado-4.4.1-py27_0 ... installing: traitlets-4.3.0-py27_0 ... installing: unicodecsv-0.14.1-py27_0 ... installing: wcwidth-0.1.7-py27_0 ... installing: werkzeug-0.11.11-py27_0 ... installing: wheel-0.29.0-py27_0 ... installing: widgetsnbextension-1.2.6-py27_0 ... installing: wrapt-1.10.6-py27_0 ... installing: xlrd-1.0.0-py27_0 ... installing: xlsxwriter-0.9.3-py27_0 ... installing: xlwt-1.1.2-py27_0 ... installing: xz-5.2.2-0 ... installing: yaml-0.1.6-0 ... installing: zeromq-4.1.4-0 ... installing: zlib-1.2.8-3 ... installing: anaconda-4.2.0-np111py27_0 ... installing: ruamel_yaml-0.11.14-py27_0 ... installing: conda-4.2.9-py27_0 ... installing: conda-build-2.0.2-py27_0 ... Python 2.7.12 :: Continuum Analytics, Inc. creating default environment... |
pywcsgrid2-0.1b2 tarball should be within our GLAST_EXT area
extract
cd
python setup.py install
Started with Anaconda2-4.0.0.sh, which install python 2.7.11, however installing healpy via conda results in an upgrade to python 2.7.12
Anaconda Python (python 2.7.11)
[/u/gl/heather/anaconda2] >>> /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat6-x86_64-64bit-gcc44/python/2.7.11 PREFIX=/afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat6-x86_64-64bit-gcc44/python/2.7.11 installing: _cache-0.0-py27_x0 ... installing: python-2.7.11-0 ... installing: alabaster-0.7.7-py27_0 ... installing: anaconda-client-1.4.0-py27_0 ... installing: anaconda-navigator-1.1.0-py27_0 ... installing: argcomplete-1.0.0-py27_1 ... installing: astropy-1.1.2-np110py27_0 ... installing: babel-2.2.0-py27_0 ... installing: backports_abc-0.4-py27_0 ... installing: beautifulsoup4-4.4.1-py27_0 ... installing: bitarray-0.8.1-py27_0 ... installing: blaze-0.9.1-py27_0 ... installing: bokeh-0.11.1-py27_0 ... installing: boto-2.39.0-py27_0 ... installing: bottleneck-1.0.0-np110py27_0 ... installing: cairo-1.12.18-6 ... installing: cdecimal-2.3-py27_0 ... installing: cffi-1.5.2-py27_0 ... installing: chest-0.2.3-py27_0 ... installing: cloudpickle-0.1.1-py27_0 ... installing: clyent-1.2.1-py27_0 ... installing: colorama-0.3.7-py27_0 ... installing: conda-manager-0.3.1-py27_0 ... installing: configobj-5.0.6-py27_0 ... installing: cryptography-1.3-py27_0 ... installing: curl-7.45.0-0 ... installing: cycler-0.10.0-py27_0 ... installing: cython-0.23.4-py27_0 ... installing: cytoolz-0.7.5-py27_0 ... installing: dask-0.8.1-py27_0 ... installing: datashape-0.5.1-py27_0 ... installing: decorator-4.0.9-py27_0 ... installing: dill-0.2.4-py27_0 ... installing: docutils-0.12-py27_0 ... installing: dynd-python-0.7.2-py27_0 ... installing: enum34-1.1.2-py27_0 ... installing: et_xmlfile-1.0.1-py27_0 ... installing: fastcache-1.0.2-py27_0 ... installing: flask-0.10.1-py27_1 ... installing: flask-cors-2.1.2-py27_0 ... installing: fontconfig-2.11.1-5 ... installing: freetype-2.5.5-0 ... installing: funcsigs-0.4-py27_0 ... installing: futures-3.0.3-py27_0 ... installing: gevent-1.1.0-py27_0 ... installing: greenlet-0.4.9-py27_0 ... installing: grin-1.2.1-py27_1 ... installing: h5py-2.5.0-np110py27_4 ... installing: hdf5-1.8.15.1-2 ... installing: heapdict-1.0.0-py27_0 ... installing: idna-2.0-py27_0 ... installing: ipaddress-1.0.14-py27_0 ... installing: ipykernel-4.3.1-py27_0 ... installing: ipython-4.1.2-py27_1 ... installing: ipython_genutils-0.1.0-py27_0 ... installing: ipywidgets-4.1.1-py27_0 ... installing: itsdangerous-0.24-py27_0 ... installing: jbig-2.1-0 ... installing: jdcal-1.2-py27_0 ... installing: jedi-0.9.0-py27_0 ... installing: jinja2-2.8-py27_0 ... installing: jpeg-8d-0 ... installing: jsonschema-2.4.0-py27_0 ... installing: jupyter-1.0.0-py27_2 ... installing: jupyter_client-4.2.2-py27_0 ... installing: jupyter_console-4.1.1-py27_0 ... installing: jupyter_core-4.1.0-py27_0 ... installing: libdynd-0.7.2-0 ... installing: libffi-3.0.13-0 ... installing: libgfortran-3.0-0 ... installing: libpng-1.6.17-0 ... installing: libsodium-1.0.3-0 ... installing: libtiff-4.0.6-1 ... installing: libxml2-2.9.2-0 ... installing: libxslt-1.1.28-0 ... installing: llvmlite-0.9.0-py27_0 ... installing: locket-0.2.0-py27_0 ... installing: lxml-3.6.0-py27_0 ... installing: markupsafe-0.23-py27_0 ... installing: matplotlib-1.5.1-np110py27_0 ... installing: mistune-0.7.2-py27_0 ... installing: mkl-11.3.1-0 ... installing: mkl-service-1.1.2-py27_0 ... installing: mpmath-0.19-py27_0 ... installing: multipledispatch-0.4.8-py27_0 ... installing: nbconvert-4.1.0-py27_0 ... installing: nbformat-4.0.1-py27_0 ... installing: networkx-1.11-py27_0 ... installing: nltk-3.2-py27_0 ... installing: nose-1.3.7-py27_0 ... installing: notebook-4.1.0-py27_1 ... installing: numba-0.24.0-np110py27_0 ... installing: numexpr-2.5-np110py27_0 ... installing: numpy-1.10.4-py27_1 ... installing: odo-0.4.2-py27_0 ... installing: openpyxl-2.3.2-py27_0 ... installing: openssl-1.0.2g-0 ... installing: pandas-0.18.0-np110py27_0 ... installing: partd-0.3.2-py27_1 ... installing: patchelf-0.8-0 ... installing: path.py-8.1.2-py27_1 ... installing: patsy-0.4.0-np110py27_0 ... installing: pep8-1.7.0-py27_0 ... installing: pexpect-4.0.1-py27_0 ... installing: pickleshare-0.5-py27_0 ... installing: pillow-3.1.1-py27_0 ... installing: pip-8.1.1-py27_1 ... installing: pixman-0.32.6-0 ... installing: ply-3.8-py27_0 ... installing: psutil-4.1.0-py27_0 ... installing: ptyprocess-0.5-py27_0 ... installing: py-1.4.31-py27_0 ... installing: pyasn1-0.1.9-py27_0 ... installing: pycairo-1.10.0-py27_0 ... installing: pycosat-0.6.1-py27_0 ... installing: pycparser-2.14-py27_0 ... installing: pycrypto-2.6.1-py27_0 ... installing: pycurl-7.19.5.3-py27_0 ... installing: pyflakes-1.1.0-py27_0 ... installing: pygments-2.1.1-py27_0 ... installing: pyopenssl-0.15.1-py27_2 ... installing: pyparsing-2.0.3-py27_0 ... installing: pyqt-4.11.4-py27_1 ... installing: pytables-3.2.2-np110py27_1 ... installing: pytest-2.8.5-py27_0 ... installing: python-dateutil-2.5.1-py27_0 ... installing: pytz-2016.2-py27_0 ... installing: pyyaml-3.11-py27_1 ... installing: pyzmq-15.2.0-py27_0 ... installing: qt-4.8.7-1 ... installing: qtawesome-0.3.2-py27_0 ... installing: qtconsole-4.2.0-py27_0 ... installing: qtpy-1.0-py27_0 ... installing: readline-6.2-2 ... installing: redis-2.6.9-0 ... installing: redis-py-2.10.3-py27_0 ... installing: requests-2.9.1-py27_0 ... installing: rope-0.9.4-py27_1 ... installing: scikit-image-0.12.3-np110py27_0 ... installing: scikit-learn-0.17.1-np110py27_0 ... installing: scipy-0.17.0-np110py27_2 ... installing: setuptools-20.3-py27_0 ... installing: simplegeneric-0.8.1-py27_0 ... installing: singledispatch-3.4.0.3-py27_0 ... installing: sip-4.16.9-py27_0 ... installing: six-1.10.0-py27_0 ... installing: snowballstemmer-1.2.1-py27_0 ... installing: sockjs-tornado-1.0.1-py27_0 ... installing: sphinx-1.3.5-py27_0 ... installing: sphinx_rtd_theme-0.1.9-py27_0 ... installing: spyder-2.3.8-py27_1 ... installing: sqlalchemy-1.0.12-py27_0 ... installing: sqlite-3.9.2-0 ... installing: ssl_match_hostname-3.4.0.2-py27_0 ... installing: statsmodels-0.6.1-np110py27_0 ... installing: sympy-1.0-py27_0 ... installing: terminado-0.5-py27_1 ... installing: tk-8.5.18-0 ... installing: toolz-0.7.4-py27_0 ... installing: tornado-4.3-py27_0 ... installing: traitlets-4.2.1-py27_0 ... installing: unicodecsv-0.14.1-py27_0 ... installing: util-linux-2.21-0 ... installing: werkzeug-0.11.4-py27_0 ... installing: wheel-0.29.0-py27_0 ... installing: xlrd-0.9.4-py27_0 ... installing: xlsxwriter-0.8.4-py27_0 ... installing: xlwt-1.0.0-py27_0 ... installing: xz-5.0.5-1 ... installing: yaml-0.1.6-0 ... installing: zeromq-4.1.3-0 ... installing: zlib-1.2.8-0 ... installing: anaconda-4.0.0-np110py27_0 ... installing: conda-4.0.5-py27_0 ... installing: conda-build-1.20.0-py27_0 ... installing: conda-env-2.4.5-py27_0 ... Python 2.7.11 :: Continuum Analytics, Inc. creating default environment... installation finished. |
pywcsgrid2-0.1b2 tarball should be within our GLAST_EXT area
extract
cd
python setup.py install
Trying Anaconda Python 2.3.0, which installs python 2.7.10
installing: python-2.7.10-0 ... installing: conda-3.14.1-py27_0 ... installing: conda-build-1.14.1-py27_0 ... installing: conda-env-2.2.3-py27_0 ... installing: _license-1.1-py27_0 ... installing: abstract-rendering-0.5.1-np19py27_0 ... installing: alabaster-0.7.3-py27_0 ... installing: argcomplete-0.8.9-py27_0 ... installing: astropy-1.0.3-np19py27_0 ... installing: babel-1.3-py27_0 ... installing: bcolz-0.9.0-np19py27_0 ... installing: beautiful-soup-4.3.2-py27_0 ... installing: binstar-0.11.0-py27_0 ... installing: bitarray-0.8.1-py27_0 ... installing: blaze-core-0.8.0-np19py27_0 ... installing: blz-0.6.2-np19py27_1 ... installing: bokeh-0.9.0-np19py27_0 ... installing: boto-2.38.0-py27_0 ... installing: bottleneck-1.0.0-np19py27_0 ... installing: cairo-1.12.18-4 ... installing: cdecimal-2.3-py27_0 ... installing: certifi-14.05.14-py27_0 ... installing: cffi-1.1.0-py27_0 ... installing: clyent-0.3.4-py27_0 ... installing: colorama-0.3.3-py27_0 ... installing: configobj-5.0.6-py27_0 ... installing: cryptography-0.9.1-py27_0 ... installing: curl-7.43.0-0 ... installing: cython-0.22.1-py27_0 ... installing: cytoolz-0.7.3-py27_0 ... installing: datashape-0.4.5-np19py27_0 ... installing: decorator-3.4.2-py27_0 ... installing: docutils-0.12-py27_0 ... installing: dynd-python-0.6.5-np19py27_0 ... installing: enum34-1.0.4-py27_0 ... installing: fastcache-1.0.2-py27_0 ... installing: flask-0.10.1-py27_1 ... installing: fontconfig-2.11.1-4 ... installing: freetype-2.5.2-2 ... installing: funcsigs-0.4-py27_0 ... installing: gevent-1.0.1-py27_0 ... installing: gevent-websocket-0.9.3-py27_0 ... installing: greenlet-0.4.7-py27_0 ... installing: grin-1.2.1-py27_1 ... installing: h5py-2.5.0-np19py27_3 ... installing: hdf5-1.8.15.1-1 ... installing: idna-2.0-py27_0 ... installing: ipaddress-1.0.7-py27_0 ... installing: ipython-3.2.0-py27_0 ... installing: ipython-notebook-3.2.0-py27_0 ... installing: ipython-qtconsole-3.2.0-py27_0 ... installing: itsdangerous-0.24-py27_0 ... installing: jdcal-1.0-py27_0 ... installing: jedi-0.8.1-py27_0 ... installing: jinja2-2.7.3-py27_1 ... installing: jpeg-8d-0 ... installing: jsonschema-2.4.0-py27_0 ... installing: libdynd-0.6.5-0 ... installing: libffi-3.0.13-0 ... installing: libpng-1.6.17-0 ... installing: libsodium-0.4.5-0 ... installing: libtiff-4.0.2-1 ... installing: libxml2-2.9.2-0 ... installing: libxslt-1.1.28-0 ... installing: llvmlite-0.5.0-py27_0 ... installing: lxml-3.4.4-py27_0 ... installing: markupsafe-0.23-py27_0 ... installing: matplotlib-1.4.3-np19py27_2 ... installing: mistune-0.5.1-py27_1 ... installing: mock-1.0.1-py27_0 ... installing: multipledispatch-0.4.7-py27_0 ... installing: networkx-1.9.1-py27_0 ... installing: nltk-3.0.3-np19py27_0 ... installing: nose-1.3.7-py27_0 ... installing: numba-0.19.1-np19py27_0 ... installing: numexpr-2.4.3-np19py27_0 ... installing: numpy-1.9.2-py27_0 ... installing: odo-0.3.2-np19py27_0 ... installing: openpyxl-1.8.5-py27_0 ... installing: openssl-1.0.1k-1 ... installing: pandas-0.16.2-np19py27_0 ... installing: patsy-0.3.0-np19py27_0 ... installing: pep8-1.6.2-py27_0 ... installing: pillow-2.8.2-py27_0 ... installing: pip-7.0.3-py27_0 ... installing: pixman-0.26.2-0 ... installing: ply-3.6-py27_0 ... installing: psutil-2.2.1-py27_0 ... installing: ptyprocess-0.4-py27_0 ... installing: py-1.4.27-py27_0 ... installing: py2cairo-1.10.0-py27_2 ... installing: pyasn1-0.1.7-py27_0 ... installing: pycosat-0.6.1-py27_0 ... installing: pycparser-2.14-py27_0 ... installing: pycrypto-2.6.1-py27_0 ... installing: pycurl-7.19.5.1-py27_2 ... installing: pyflakes-0.9.2-py27_0 ... installing: pygments-2.0.2-py27_0 ... installing: pyopenssl-0.15.1-py27_1 ... installing: pyparsing-2.0.3-py27_0 ... installing: pyqt-4.11.3-py27_1 ... installing: pytables-3.2.0-np19py27_0 ... installing: pytest-2.7.1-py27_0 ... installing: python-dateutil-2.4.2-py27_0 ... installing: pytz-2015.4-py27_0 ... installing: pyyaml-3.11-py27_1 ... installing: pyzmq-14.7.0-py27_0 ... installing: qt-4.8.6-3 ... installing: readline-6.2-2 ... installing: redis-2.6.9-0 ... installing: redis-py-2.10.3-py27_0 ... installing: requests-2.7.0-py27_0 ... installing: rope-0.9.4-py27_1 ... installing: runipy-0.1.3-py27_0 ... installing: scikit-image-0.11.3-np19py27_0 ... installing: scikit-learn-0.16.1-np19py27_0 ... installing: scipy-0.15.1-np19py27_0 ... installing: setuptools-17.1.1-py27_0 ... installing: sip-4.16.5-py27_0 ... installing: six-1.9.0-py27_0 ... installing: snowballstemmer-1.2.0-py27_0 ... installing: sockjs-tornado-1.0.1-py27_0 ... installing: sphinx-1.3.1-py27_0 ... installing: sphinx_rtd_theme-0.1.7-py27_0 ... installing: spyder-2.3.5.2-py27_0 ... installing: spyder-app-2.3.5.2-py27_0 ... installing: sqlalchemy-1.0.5-py27_0 ... installing: sqlite-3.8.4.1-1 ... installing: ssl_match_hostname-3.4.0.2-py27_0 ... installing: statsmodels-0.6.1-np19py27_0 ... installing: sympy-0.7.6-py27_0 ... installing: system-5.8-2 ... installing: terminado-0.5-py27_0 ... installing: theano-0.7.0-np19py27_0 ... installing: tk-8.5.18-0 ... installing: toolz-0.7.2-py27_0 ... installing: tornado-4.2-py27_0 ... installing: ujson-1.33-py27_0 ... installing: unicodecsv-0.9.4-py27_0 ... installing: util-linux-2.21-0 ... installing: werkzeug-0.10.4-py27_0 ... installing: xlrd-0.9.3-py27_0 ... installing: xlsxwriter-0.7.3-py27_0 ... installing: xlwt-1.0.0-py27_0 ... installing: yaml-0.1.6-0 ... installing: zeromq-4.0.5-0 ... installing: zlib-1.2.8-0 ... installing: anaconda-2.3.0-np19py27_0 ... installing: _cache-0.0-x0 ... Python 2.7.10 :: Continuum Analytics, Inc. creating default environment... linktype: copy linking: _cache-0.0-x0 linking: _license-1.1-py27_0 linking: abstract-rendering-0.5.1-np19py27_0 linking: alabaster-0.7.3-py27_0 linking: anaconda-2.3.0-np19py27_0 linking: argcomplete-0.8.9-py27_0 linking: astropy-1.0.3-np19py27_0 linking: babel-1.3-py27_0 linking: bcolz-0.9.0-np19py27_0 linking: beautiful-soup-4.3.2-py27_0 linking: binstar-0.11.0-py27_0 linking: bitarray-0.8.1-py27_0 linking: blaze-core-0.8.0-np19py27_0 linking: blz-0.6.2-np19py27_1 linking: bokeh-0.9.0-np19py27_0 linking: boto-2.38.0-py27_0 linking: bottleneck-1.0.0-np19py27_0 linking: cairo-1.12.18-4 linking: cdecimal-2.3-py27_0 linking: certifi-14.05.14-py27_0 linking: cffi-1.1.0-py27_0 linking: clyent-0.3.4-py27_0 linking: colorama-0.3.3-py27_0 linking: conda-3.14.1-py27_0 linking: conda-build-1.14.1-py27_0 linking: conda-env-2.2.3-py27_0 linking: configobj-5.0.6-py27_0 linking: cryptography-0.9.1-py27_0 linking: curl-7.43.0-0 linking: cython-0.22.1-py27_0 linking: cytoolz-0.7.3-py27_0 linking: datashape-0.4.5-np19py27_0 linking: decorator-3.4.2-py27_0 linking: docutils-0.12-py27_0 linking: dynd-python-0.6.5-np19py27_0 linking: enum34-1.0.4-py27_0 linking: fastcache-1.0.2-py27_0 linking: flask-0.10.1-py27_1 linking: fontconfig-2.11.1-4 linking: freetype-2.5.2-2 linking: funcsigs-0.4-py27_0 linking: gevent-1.0.1-py27_0 linking: gevent-websocket-0.9.3-py27_0 linking: greenlet-0.4.7-py27_0 linking: grin-1.2.1-py27_1 linking: h5py-2.5.0-np19py27_3 linking: hdf5-1.8.15.1-1 linking: idna-2.0-py27_0 linking: ipaddress-1.0.7-py27_0 linking: ipython-3.2.0-py27_0 linking: ipython-notebook-3.2.0-py27_0 linking: ipython-qtconsole-3.2.0-py27_0 linking: itsdangerous-0.24-py27_0 linking: jdcal-1.0-py27_0 linking: jedi-0.8.1-py27_0 linking: jinja2-2.7.3-py27_1 linking: jpeg-8d-0 linking: jsonschema-2.4.0-py27_0 linking: libdynd-0.6.5-0 linking: libffi-3.0.13-0 linking: libpng-1.6.17-0 linking: libsodium-0.4.5-0 linking: libtiff-4.0.2-1 linking: libxml2-2.9.2-0 linking: libxslt-1.1.28-0 linking: llvmlite-0.5.0-py27_0 linking: lxml-3.4.4-py27_0 linking: markupsafe-0.23-py27_0 linking: matplotlib-1.4.3-np19py27_2 linking: mistune-0.5.1-py27_1 linking: mock-1.0.1-py27_0 linking: multipledispatch-0.4.7-py27_0 linking: networkx-1.9.1-py27_0 linking: nltk-3.0.3-np19py27_0 linking: nose-1.3.7-py27_0 linking: numba-0.19.1-np19py27_0 linking: numexpr-2.4.3-np19py27_0 linking: numpy-1.9.2-py27_0 linking: odo-0.3.2-np19py27_0 linking: openpyxl-1.8.5-py27_0 linking: openssl-1.0.1k-1 linking: pandas-0.16.2-np19py27_0 linking: patsy-0.3.0-np19py27_0 linking: pep8-1.6.2-py27_0 linking: pillow-2.8.2-py27_0 linking: pip-7.0.3-py27_0 linking: pixman-0.26.2-0 linking: ply-3.6-py27_0 linking: psutil-2.2.1-py27_0 linking: ptyprocess-0.4-py27_0 linking: py-1.4.27-py27_0 linking: py2cairo-1.10.0-py27_2 linking: pyasn1-0.1.7-py27_0 linking: pycosat-0.6.1-py27_0 linking: pycparser-2.14-py27_0 linking: pycrypto-2.6.1-py27_0 linking: pycurl-7.19.5.1-py27_2 linking: pyflakes-0.9.2-py27_0 linking: pygments-2.0.2-py27_0 linking: pyopenssl-0.15.1-py27_1 linking: pyparsing-2.0.3-py27_0 linking: pyqt-4.11.3-py27_1 linking: pytables-3.2.0-np19py27_0 linking: pytest-2.7.1-py27_0 linking: python-2.7.10-0 linking: python-dateutil-2.4.2-py27_0 linking: pytz-2015.4-py27_0 linking: pyyaml-3.11-py27_1 linking: pyzmq-14.7.0-py27_0 linking: qt-4.8.6-3 linking: readline-6.2-2 linking: redis-2.6.9-0 linking: redis-py-2.10.3-py27_0 linking: requests-2.7.0-py27_0 linking: rope-0.9.4-py27_1 linking: runipy-0.1.3-py27_0 linking: scikit-image-0.11.3-np19py27_0 linking: scikit-learn-0.16.1-np19py27_0 linking: scipy-0.15.1-np19py27_0 linking: setuptools-17.1.1-py27_0 linking: sip-4.16.5-py27_0 linking: six-1.9.0-py27_0 linking: snowballstemmer-1.2.0-py27_0 linking: sockjs-tornado-1.0.1-py27_0 linking: sphinx-1.3.1-py27_0 linking: sphinx_rtd_theme-0.1.7-py27_0 linking: spyder-2.3.5.2-py27_0 linking: spyder-app-2.3.5.2-py27_0 linking: sqlalchemy-1.0.5-py27_0 linking: sqlite-3.8.4.1-1 linking: ssl_match_hostname-3.4.0.2-py27_0 linking: statsmodels-0.6.1-np19py27_0 linking: sympy-0.7.6-py27_0 linking: system-5.8-2 linking: terminado-0.5-py27_0 linking: theano-0.7.0-np19py27_0 linking: tk-8.5.18-0 linking: toolz-0.7.2-py27_0 linking: tornado-4.2-py27_0 linking: ujson-1.33-py27_0 linking: unicodecsv-0.9.4-py27_0 linking: util-linux-2.21-0 linking: werkzeug-0.10.4-py27_0 linking: xlrd-0.9.3-py27_0 linking: xlsxwriter-0.7.3-py27_0 linking: xlwt-1.0.0-py27_0 linking: yaml-0.1.6-0 linking: zeromq-4.0.5-0 linking: zlib-1.2.8-0 installation finished. |
Still need to install pyfits, healpy, pmwcs
after Anaconda installation is finished, add bin directory to your PATH and then install additional packages needed for Fermi:
pywcsgrid2-0.1b2 tarball should be within our GLAST_EXT area
extract
cd
python setup.py install
pip install pyfits (3.4)
pip install pywcs (1.12)
APLpy 0.9.14 from source via python setup.py install
The following packages will be UPDATED:
astropy: 1.0.3-np19py27_0 --> 1.1.2-np110py27_0 (soft-link) conda: 3.14.1-py27_0 --> 4.0.5-py27_0 (soft-link) conda-env: 2.2.3-py27_0 --> 2.4.5-py27_0 (soft-link) numpy: 1.9.2-py27_0 --> 1.10.4-py27_1 (soft-link) openssl: 1.0.1k-1 --> 1.0.2g-0 (soft-link) pip: 7.0.3-py27_0 --> 8.1.1-py27_0 (soft-link) python: 2.7.10-0 --> 2.7.11-0 (soft-link) requests: 2.7.0-py27_0 --> 2.9.1-py27_0 (soft-link) setuptools: 17.1.1-py27_0 --> 20.3-py27_0 (soft-link) sqlite: 3.8.4.1-1 --> 3.9.2-0 (soft-link)
|
pywcsgrid2-0.1b2 tarball should be within our GLAST_EXT area
extract
cd
python setup.py install
Home page: http://pmw.sourceforge.net/
Note Pmw 2.0.0 is for Python 3.0 while the 1.3 series is meant for Python 2.x. The Pmw-2.0.0 tarball includes both versions and during the installation chooses the correct one to install based on the version of python.
Starting to try Anaconda Python distribution: Anaconda-2.1.0-Linux-x86_64.sh
[/u/gl/heather/anaconda] >>> /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat6-x86_64-64bit-gcc44/python/2.7.8
PREFIX=/afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat6-x86_64-64bit-gcc44/python/2.7.8
installing: python-2.7.8-1 ...
installing: conda-3.7.0-py27_0 ...
installing: conda-build-1.8.2-py27_0 ...
installing: _license-1.1-py27_0 ...
installing: abstract-rendering-0.5.1-np19py27_0 ...
installing: argcomplete-0.8.1-py27_0 ...
installing: astropy-0.4.2-np19py27_0 ...
installing: atom-0.3.9-py27_0 ...
installing: beautiful-soup-4.3.2-py27_0 ...
installing: binstar-0.7.1-py27_0 ...
installing: bitarray-0.8.1-py27_0 ...
installing: blaze-0.6.3-np19py27_0 ...
installing: blz-0.6.2-np19py27_0 ...
installing: bokeh-0.6.1-np19py27_0 ...
installing: boto-2.32.1-py27_0 ...
installing: cairo-1.12.2-2 ...
installing: casuarius-1.1-py27_0 ...
installing: cdecimal-2.3-py27_0 ...
installing: cffi-0.8.6-py27_0 ...
installing: chaco-4.4.1-np19py27_0 ...
installing: colorama-0.3.1-py27_0 ...
installing: configobj-5.0.6-py27_0 ...
installing: cryptography-0.5.4-py27_0 ...
installing: curl-7.38.0-0 ...
installing: cython-0.21-py27_0 ...
installing: cytoolz-0.7.0-py27_0 ...
installing: datashape-0.3.0-np19py27_1 ...
installing: dateutil-2.1-py27_2 ...
installing: decorator-3.4.0-py27_0 ...
installing: docutils-0.12-py27_0 ...
installing: dynd-python-0.6.5-np19py27_0 ...
installing: enable-4.3.0-np19py27_2 ...
installing: enaml-0.9.8-py27_0 ...
installing: flask-0.10.1-py27_1 ...
installing: freetype-2.4.10-0 ...
installing: future-0.13.1-py27_0 ...
installing: futures-2.1.6-py27_0 ...
installing: gevent-1.0.1-py27_0 ...
installing: gevent-websocket-0.9.3-py27_0 ...
installing: greenlet-0.4.4-py27_0 ...
installing: grin-1.2.1-py27_1 ...
installing: h5py-2.3.1-np19py27_0 ...
installing: hdf5-1.8.13-0 ...
installing: ipython-2.2.0-py27_0 ...
installing: ipython-notebook-2.2.0-py27_0 ...
installing: ipython-qtconsole-2.2.0-py27_0 ...
installing: itsdangerous-0.24-py27_0 ...
installing: jdcal-1.0-py27_0 ...
installing: jinja2-2.7.3-py27_1 ...
installing: jpeg-8d-0 ...
installing: kiwisolver-0.1.3-py27_0 ...
installing: lcms-1.19-0 ...
installing: libdynd-0.6.5-0 ...
installing: libffi-3.0.13-0 ...
installing: libpng-1.5.13-1 ...
installing: libsodium-0.4.5-0 ...
installing: libtiff-4.0.2-1 ...
installing: libxml2-2.9.0-0 ...
installing: libxslt-1.1.28-0 ...
installing: llvm-3.3-0 ...
installing: llvmpy-0.12.7-py27_0 ...
installing: lxml-3.4.0-py27_0 ...
installing: markupsafe-0.23-py27_0 ...
installing: matplotlib-1.4.0-np19py27_0 ...
installing: mock-1.0.1-py27_0 ...
installing: mpi4py-1.3-py27_0 ...
installing: mpich2-1.4.1p1-0 ...
installing: multipledispatch-0.4.7-py27_0 ...
installing: networkx-1.9.1-py27_0 ...
installing: nltk-3.0.0-np19py27_0 ...
installing: nose-1.3.4-py27_0 ...
installing: numba-0.14.0-np19py27_0 ...
installing: numexpr-2.3.1-np19py27_0 ...
installing: numpy-1.9.0-py27_0 ...
installing: openpyxl-1.8.5-py27_0 ...
installing: openssl-1.0.1h-1 ...
installing: pandas-0.14.1-np19py27_0 ...
installing: patsy-0.3.0-np19py27_0 ...
installing: pep8-1.5.7-py27_0 ...
installing: pil-1.1.7-py27_1 ...
installing: pip-1.5.6-py27_0 ...
installing: pixman-0.26.2-0 ...
installing: ply-3.4-py27_0 ...
installing: psutil-2.1.1-py27_0 ...
installing: py-1.4.25-py27_0 ...
installing: py2cairo-1.10.0-py27_1 ...
installing: pycosat-0.6.1-py27_0 ...
installing: pycparser-2.10-py27_0 ...
installing: pycrypto-2.6.1-py27_0 ...
installing: pycurl-7.19.5-py27_1 ...
installing: pyface-4.4.0-py27_0 ...
installing: pyflakes-0.8.1-py27_0 ...
installing: pygments-1.6-py27_0 ...
installing: pyopenssl-0.14-py27_0 ...
installing: pyparsing-2.0.1-py27_0 ...
installing: pyqt-4.10.4-py27_0 ...
installing: pytables-3.1.1-np19py27_1 ...
installing: pytest-2.6.3-py27_0 ...
installing: pytz-2014.7-py27_0 ...
installing: pyyaml-3.11-py27_0 ...
installing: pyzmq-14.3.1-py27_0 ...
installing: qt-4.8.5-0 ...
installing: readline-6.2-2 ...
installing: redis-2.6.9-0 ...
installing: redis-py-2.9.1-py27_0 ...
installing: requests-2.4.1-py27_0 ...
installing: rope-0.9.4-py27_1 ...
installing: runipy-0.1.1-py27_0 ...
installing: scikit-image-0.10.1-np19py27_0 ...
installing: scikit-learn-0.15.2-np19py27_0 ...
installing: scipy-0.14.0-np19py27_0 ...
installing: setuptools-5.8-py27_0 ...
installing: sip-4.15.5-py27_0 ...
installing: six-1.8.0-py27_0 ...
installing: sockjs-tornado-1.0.1-py27_0 ...
installing: sphinx-1.2.3-py27_0 ...
installing: spyder-2.3.1-py27_0 ...
installing: spyder-app-2.3.1-py27_0 ...
installing: sqlalchemy-0.9.7-py27_0 ...
installing: sqlite-3.8.4.1-0 ...
installing: ssl_match_hostname-3.4.0.2-py27_0 ...
installing: statsmodels-0.5.0-np19py27_2 ...
installing: sympy-0.7.5-py27_0 ...
installing: system-5.8-1 ...
installing: theano-0.6.0-np19py27_0 ...
installing: tk-8.5.15-0 ...
installing: toolz-0.7.0-py27_0 ...
installing: tornado-4.0.2-py27_0 ...
installing: traits-4.4.0-py27_0 ...
installing: traitsui-4.4.0-py27_0 ...
installing: ujson-1.33-py27_0 ...
installing: unicodecsv-0.9.4-py27_0 ...
installing: util-linux-2.21-0 ...
installing: werkzeug-0.9.6-py27_1 ...
installing: xlrd-0.9.3-py27_0 ...
installing: xlsxwriter-0.5.7-py27_0 ...
installing: xlwt-0.7.5-py27_0 ...
installing: yaml-0.1.4-0 ...
installing: zeromq-4.0.4-0 ...
installing: zlib-1.2.7-0 ...
installing: anaconda-2.1.0-np19py27_0 ...
installing: _cache-0.0-x0 ...
after Anaconda installation is finished, add bin directory to your PATH and then install additional packages needed for Fermi:
pywcsgrid2-0.1b2 tarball should be within our GLAST_EXT area
extract
cd
python setup.py install
unit test framework necessary for running numpy and scipy unit tests
Still installing by hand to include --fcompiler flag to force correct fortran compiler to be used. This is dictated by whatever blas and lapack are linked against. For more information, see the numpy INSTALL.txt file.
pip install pyfits
pip install matplotlib
which also installed tornado, python-dateutil, pyparsing, six, and backport.ssl-match-hostname
pip install pywcsS
pip install astropy
pip install APLpy
The 4Suite-XML web site no longer works via easy_install. Installing by hand
python setup.py install
Continuing to install by hand to provide compiler flag to force correct fortran compiler, depending on what blas and lapack are linked against (try ldd /usr/lib/libblas.so). See SciPy's INSTALL.txt file for more information.
Download scipy-0.14.1.tar.gz from http://www.scipy.org/
Extract scipy-0.14.0.tar.gz
Change directory to scipy-0.14.0
Execute python setup.py config_fc --fcompiler=gnu95 install
Leave and erase scipy-0.14.0
Test by starting up python and doing:
import scipy
scipy.test() (NOTE this segfaulted on rhel5-32.. hoping that's not a big deal)
Download from https://github.com/leejjoon/pywcsgrid2/downloads
Extract
cd
python setup.py install
curl -O http://pyyaml.org/download/pyyaml/PyYAML-3.11.tar.gz
python setup.py install
see: https://pypi.python.org/pypi/healpy
pip install healpy
https://virtualenv.pypa.io/en/latest/virtualenv.html#installation
pip install virtualenv
How to use: http://docs.python-guide.org/en/latest/dev/virtualenvs/
Home page: http://pmw.sourceforge.net/
Note Pmw 2.0.0 is for Python 3.0 while the 1.3 series is meant for Python 2.x. The Pmw-2.0.0 tarball includes both versions and during the installation chooses the correct one to install based on the version of python.
We do not distribute IPython any long due to ongoing issues with hard-coded paths associated with IPython. Instead, we manually create the tar.gz file and copy it over to u35, then install IPython for use at SLAC in the GLAST_EXT copy.
pip install ipython
Run the iptest located in python's bin directory.
to support HTML notebooks:
pyzmq
zeromq 4.1.3
download from http://zeromq.org/area:download
curl -O http://download.zeromq.org/zeromq-4.1.3.tar.gz
zeromq depends on libsodium https://download.libsodium.org/doc/installation/index.html
curl -O https://download.libsodium.org/libsodium/releases/libsodium-1.0.3.tar.gz
uncompress libsodium.tar.gz
./configure --prefix=location
make && make check
make install
I chose to store the libsodium installation as part of my zeromq install in $GLAST_EXT/zeromq/4.1.3
To build zeromq
./configure --prefix=$GLAST_EXT/zeromq/4.1.3 PKG_CONFIG_PATH=$GLAST_EXT/zeromq/4.1.3/lib/pkgconfig CPPFLAGS=-I$GLAST_EXT/zeromq/4.1.3/include LDFLAGS=-L$GLAST_EXT/zeromq/4.1.3/lib
make
make install
Then install pyzmq 14.7.0:
pip install pyzmq --install-option="--zmq=$GLAST_EXT/zeromq/4.0.4"
Jinga2: http://jinja.pocoo.org/docs/intro/#installation
pip install Jinja2
edit setup.py, in detect_modules() change the lines from:
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
to:
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
add_dir_to_list(self.compiler.library_dirs, '/usr/lib')
add_dir_to_list(self.compiler.include_dirs, '/usr/include')
unit test framework necessary for running numpy and scipy unit tests
Still installing by hand to include --fcompiler flag to force correct fortran compiler to be used. This is dictated by whatever blas and lapack are linked against. For more information, see the numpy INSTALL.txt file.
pip install pyfits
pip install matplotlib
which also installed tornado, python-dateutil, pyparsing, six, and backport.ssl-match-hostname
pip install pywcs
pip install astropy
pip install APLpy
The 4Suite-XML web site no longer works via easy_install. Installing by hand
python setup.py install
Continuing to install by hand to provide compiler flag to force correct fortran compiler, depending on what blas and lapack are linked against (try ldd /usr/lib/libblas.so). See SciPy's INSTALL.txt file for more information.
Download scipy-0.14.1.tar.gz from http://www.scipy.org/
Extract scipy-0.14.0.tar.gz
Change directory to scipy-0.14.0
Execute python setup.py config_fc --fcompiler=gnu95 install
Leave and erase scipy-0.14.0
Test by starting up python and doing:
import scipy
scipy.test() (NOTE this segfaulted on rhel5-32.. hoping that's not a big deal)
Download from https://github.com/leejjoon/pywcsgrid2/downloads
Extract
cd
python setup.py install
curl -O http://pyyaml.org/download/pyyaml/PyYAML-3.11.tar.gz
python setup.py install
see: https://pypi.python.org/pypi/healpy
pip install healpy
https://virtualenv.pypa.io/en/latest/virtualenv.html#installation
pip install virtualenv
How to use: http://docs.python-guide.org/en/latest/dev/virtualenvs/
Home page: http://pmw.sourceforge.net/
Note Pmw 2.0.0 is for Python 3.0 while the 1.3 series is meant for Python 2.x. The Pmw-2.0.0 tarball includes both versions and during the installation chooses the correct one to install based on the version of python.
We do not distribute IPython any long due to ongoing issues with hard-coded paths associated with IPython. Instead, we manually create the tar.gz file and copy it over to u35, then install IPython for use at SLAC in the GLAST_EXT copy.
pip install ipython
Run the iptest located in python's bin directory.
to support HTML notebooks:
pyzmq
zeromq
download from http://zeromq.org/area:download
./configure --prefix=location
make
make install
pip install pyzmq --install-option="--zmq=$GLAST_EXT/zeromq/4.0.4"
Jinga2: http://jinja.pocoo.org/docs/intro/#installation
pip install Jinja2
edit setup.py, in detect_modules() change the lines from:
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
to:
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
add_dir_to_list(self.compiler.library_dirs, '/usr/lib')
add_dir_to_list(self.compiler.include_dirs, '/usr/include')
unit test framework necessary for running numpy and scipy unit tests
Still installing by hand to include --fcompiler flag to force correct fortran compiler to be used. This is dictated by whatever blas and lapack are linked against. For more information, see the numpy INSTALL.txt file.
pip install pyfits
pip install matplotlib
which also installed tornado, python-dateutil, pyparsing, six, and backport.ssl-match-hostname
pip install pywcs
pip install astropy
pip install APLpy
The 4Suite-XML web site no longer works via easy_install. Installing by hand
python setup.py install
Download scipy-0.14.1.tar.gz from http://www.scipy.org/
Extract scipy-0.14.0.tar.gz
Change directory to scipy-0.14.0
Execute python setup.py config_fc --fcompiler=gnu95 install
Leave and erase scipy-0.14.0
Test by starting up python and doing:
import scipy
scipy.test() (NOTE this segfaulted on rhel5-32.. hoping that's not a big deal)
Download from https://github.com/leejjoon/pywcsgrid2/downloads
Extract
cd
python setup.py install
curl -O http://pyyaml.org/download/pyyaml/PyYAML-3.11.tar.gz
python setup.py install
see: https://pypi.python.org/pypi/healpy
pip install healpy
https://virtualenv.pypa.io/en/latest/virtualenv.html#installation
pip install virtualenv
How to use: http://docs.python-guide.org/en/latest/dev/virtualenvs/
We do not distribute IPython any long due to ongoing issues with hard-coded paths associated with IPython. Instead, we manually create the tar.gz file and copy it over to u35, then install IPython for use at SLAC in the GLAST_EXT copy.
pip install ipython
Run the iptest located in python's bin directory.
to support HTML notebooks:
pyzmq
zeromq
download from http://zeromq.org/area:download
./configure --prefix=location
make
make install
pip install pyzmq --install-option="--zmq=$GLAST_EXT/zeromq/4.0.4"
Jinga2: http://jinja.pocoo.org/docs/intro/#installation
pip install Jinja2
NOTE Aug 20, 2015: This version of python on RHEL6-64 was updated to include astropy 1.0.4 which caused numpy to be updated as well. See email thread in opsproblist from Aug 20, 2015 |
started really building the shared python library but also need the static lib for GR and ST too. Need to hide the shared library during installation to avoid using it during the install process for things like numpy.
These instructions should be performed as the glastrm user or with appropriate privileges to write in the GLAST_EXT area.
Note that the scipy unit test will report failures due to missing symbols in the rhel4 blas installed at SLAC. This is likely always been the case, and apparently cannot be fixed unless we're will to install BLAS and Lapack ourselves.
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
to:
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
add_dir_to_list(self.compiler.library_dirs, '/usr/lib')
add_dir_to_list(self.compiler.include_dirs, '/usr/include')
6. setenv LDFLAGS -fPIC; setenv CPPFLAGS -fPIC; setenv CFLAGS -m64 -fPIC
need to force 64 bit build even on rhel6-64
curl https://raw.github.com/pypa/pip/master/contrib/get-pip.py | python
unit test framework necessary for running numpy and scipy unit tests
Still installing by hand to include --fcompiler flag to force correct fortran compiler to be used. This is dictated by whatever blas and lapack are linked against. For more information, see the numpy INSTALL.txt file. On RHEL6-64:
glastrm@noric22 $ ldd /usr/lib64/liblapack.so
linux-vdso.so.1 => (0x00007fff49dff000)
libblas.so.3 => /usr/lib64/libblas.so.3 (0x00007fac2ac9d000)
libm.so.6 => /lib64/libm.so.6 (0x00007fac2aa18000)
libgfortran.so.3 => /usr/lib64/libgfortran.so.3 (0x00007fac2a726000)
libc.so.6 => /lib64/libc.so.6 (0x00007fac2a394000)
/lib64/ld-linux-x86-64.so.2 (0x00007fac2b72d000)
where libgfortran means we should use the gnu95 flag
pip install pyfits
pip install matplotlib
http://sourceforge.net/projects/matplotlib/files/matplotlib/matplotlib-1.0/matplotlib-1.0.0.tar.gz
pip install pywcs
pip install APLpy
The 4Suite-XML web site no longer works via easy_install. Installing by hand
python setup.py install
Continuing to install by hand to provide compiler flag to force correct fortran compiler, depending on what blas and lapack are linked against (try ldd /usr/lib/libblas.so). See SciPy's INSTALL.txt file for more information.
Download scipy-0.10.1.tar.gz from http://www.scipy.org/ and save to /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat6-i686-64bit-gcc44/python if it doesn't already exist.
Extract scipy-0.10.1.tar.gz
Change directory to scipy-0.10.1
Execute python setup.py config_fc --fcompiler=gnu95 install
Leave and erase scipy-0.10.1
Test by starting up python and doing:
import scipy
scipy.test()
Download from https://github.com/leejjoon/pywcsgrid2/downloads
Extract
cd
python setup.py install
We do not distribute IPython any long due to ongoing issues with hard-coded paths associated with IPython. Instead, we manually create the tar.gz file and copy it over to u35, then install IPython for use at SLAC in the GLAST_EXT copy.
curl -O http://pyyaml.org/download/pyyaml/PyYAML-3.10.tar.gz
python setup.py install
pip install ipython
Run the iptest located in python's bin directory.
started really building the shared python library
These instructions should be performed as the glastrm user or with appropriate privileges to write in the GLAST_EXT area.
Note that the scipy unit test will report failures due to missing symbols in the rhel4 blas installed at SLAC. This is likely always been the case, and apparently cannot be fixed unless we're will to install BLAS and Lapack ourselves.
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
to:
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
add_dir_to_list(self.compiler.library_dirs, '/usr/lib')
add_dir_to_list(self.compiler.include_dirs, '/usr/include')
6. setenv LDFLAGS -fPIC; setenv CPPFLAGS -fPIC; setenv CFLAGS -m64 -fPIC
need to force 64 bit build even on rhel6-64
curl https://raw.github.com/pypa/pip/master/contrib/get-pip.py | python
unit test framework necessary for running numpy and scipy unit tests
Still installing by hand to include --fcompiler flag to force correct fortran compiler to be used. This is dictated by whatever blas and lapack are linked against. For more information, see the numpy INSTALL.txt file. On RHEL6-64:
glastrm@noric22 $ ldd /usr/lib64/liblapack.so
linux-vdso.so.1 => (0x00007fff49dff000)
libblas.so.3 => /usr/lib64/libblas.so.3 (0x00007fac2ac9d000)
libm.so.6 => /lib64/libm.so.6 (0x00007fac2aa18000)
libgfortran.so.3 => /usr/lib64/libgfortran.so.3 (0x00007fac2a726000)
libc.so.6 => /lib64/libc.so.6 (0x00007fac2a394000)
/lib64/ld-linux-x86-64.so.2 (0x00007fac2b72d000)
where libgfortran means we should use the gnu95 flag
pip install pyfits
pip install matplotlib
http://sourceforge.net/projects/matplotlib/files/matplotlib/matplotlib-1.0/matplotlib-1.0.0.tar.gz
pip install pywcs
pip install APLpy
The 4Suite-XML web site no longer works via easy_install. Installing by hand
python setup.py install
Continuing to install by hand to provide compiler flag to force correct fortran compiler, depending on what blas and lapack are linked against (try ldd /usr/lib/libblas.so). See SciPy's INSTALL.txt file for more information.
Download scipy-0.10.1.tar.gz from http://www.scipy.org/ and save to /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat6-i686-64bit-gcc44/python if it doesn't already exist.
Extract scipy-0.10.1.tar.gz
Change directory to scipy-0.10.1
Execute python setup.py config_fc --fcompiler=gnu95 install
Leave and erase scipy-0.10.1
Test by starting up python and doing:
import scipy
scipy.test()
Download from https://github.com/leejjoon/pywcsgrid2/downloads
Extract
cd
python setup.py install
We do not distribute IPython any long due to ongoing issues with hard-coded paths associated with IPython. Instead, we manually create the tar.gz file and copy it over to u35, then install IPython for use at SLAC in the GLAST_EXT copy.
curl -O http://pyyaml.org/download/pyyaml/PyYAML-3.10.tar.gz
python setup.py install
pip install ipython
Run the iptest located in python's bin directory.
These instructions should be performed as the glastrm user or with appropriate privileges to write in the GLAST_EXT area.
Note that the scipy unit test will report failures due to missing symbols in the rhel4 blas installed at SLAC. This is likely always been the case, and apparently cannot be fixed unless we're will to install BLAS and Lapack ourselves.
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
to:
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
add_dir_to_list(self.compiler.library_dirs, '/usr/lib')
add_dir_to_list(self.compiler.include_dirs, '/usr/include')
6. setenv LDFLAGS -fPIC; setenv CPPFLAGS -fPIC; setenv CFLAGS -fPIC
curl https://raw.github.com/pypa/pip/master/contrib/get-pip.py | python
Still installing by hand to include --fcompiler flag to force correct fortran compiler to be used. This is dictated by whatever blas and lapack are linked against. For more information, see the numpy INSTALL.txt file. On RHEL6-64:
glastrm@noric22 $ ldd /usr/lib64/liblapack.so
linux-vdso.so.1 => (0x00007fff49dff000)
libblas.so.3 => /usr/lib64/libblas.so.3 (0x00007fac2ac9d000)
libm.so.6 => /lib64/libm.so.6 (0x00007fac2aa18000)
libgfortran.so.3 => /usr/lib64/libgfortran.so.3 (0x00007fac2a726000)
libc.so.6 => /lib64/libc.so.6 (0x00007fac2a394000)
/lib64/ld-linux-x86-64.so.2 (0x00007fac2b72d000)
where libgfortran means we should use the gnu95 flag
pip install pyfits
pip install matplotlib
http://sourceforge.net/projects/matplotlib/files/matplotlib/matplotlib-1.0/matplotlib-1.0.0.tar.gz
pip install pywcs
pip install APLpy
The 4Suite-XML web site no longer works via easy_install. Installing by hand
python setup.py install
Continuing to install by hand to provide compiler flag to force correct fortran compiler, depending on what blas and lapack are linked against (try ldd /usr/lib/libblas.so). See SciPy's INSTALL.txt file for more information.
Download scipy-0.10.1.tar.gz from http://www.scipy.org/ and save to /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat6-i686-64bit-gcc44/python if it doesn't already exist.
Extract scipy-0.10.1.tar.gz
Change directory to scipy-0.10.1
Execute python setup.py config_fc --fcompiler=gnu95 install
Leave and erase scipy-0.10.1
Test by starting up python and doing:
import scipy
scipy.test()
Download from https://github.com/leejjoon/pywcsgrid2/downloads
Extract
cd
python setup.py install
We do not distribute IPython any long due to ongoing issues with hard-coded paths associated with IPython. Instead, we manually create the tar.gz file and copy it over to u35, then install IPython for use at SLAC in the GLAST_EXT copy.
http://sympy.org/en/index.html
curl -O http://sympy.googlecode.com/files/sympy-0.7.2.tar.gz
python setup.py install
pip install ipython
Run the iptest located in python's bin directory.
Adding in the following modules:
distribute0.6.16
pip1.0.1
nose1.0.0
numpy 1.5.1
pyfits 2.4.0
matplotlib1.0.0
pywcs 1.10-4.7
APLpy 0.9.5
4Suite-XML 1.0.2
scipy 0.9.0
iPython 0.10.2
pywcsgrid2
These instructions should be performed as the glastrm user or with appropriate privileges to write in the GLAST_EXT area.
Note that the scipy unit test will report failures due to missing symbols in the rhel4 blas installed at SLAC. This is likely always been the case, and apparently cannot be fixed unless we're will to install BLAS and Lapack ourselves.
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
to:
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
add_dir_to_list(self.compiler.library_dirs, '/usr/lib')
add_dir_to_list(self.compiler.include_dirs, '/usr/include')
Unable to install numpy 1.5.1 successfully on rhel4-64, due to a known bug with 64 bit and gcc3. The numpy unit test fails. Fix is to move to gcc4, which we cannot do. For now remaining on python 2.6.5. In either case, the scipy unit tests results some errors which we seemingly have always been dealing with. The bug report suggests doing a new install of BLAS, but according to unix-admins that is not possible.
Same directions as redhat4-i686-32bit-gcc34. The fortran compiler to use for numpy and scipy install is gfortran so --fcompiler=gnu95. There should be no errors in the numpy or scipy unit tests.
Same directions as redhat4-i686-32bit-gcc34. The fortran compiler to use for numpy and scipy install is gfortran so --fcompiler=gnu95. There should be no errors in the numpy or scipy unit tests.
pip and easy_install have no connectivity to download on bldmac02, so performing all module installations by hand.
Skipping matplotlib (some missing system libraries would have to be installed), pywcsgrid2 (needs matplotlib), APLpy (needs matplotlib), and SciPy (due to missing fortran compiler)
These modules should additionally be installed into python after updating PATH to point to the new python binary.
easy_install replacement that should also work with python 3.0
unit test framework necessary for running numpy and scipy unit tests
Still installing by hand to include --fcompiler flag to force correct fortran compiler to be used. This is dictated by whatever blas and lapack are linked against. For more information, see the numpy INSTALL.txt file.
Had to provide explicit web link to version we wanted to install, otherwise the default seems to be 0.91
This module was not recognized by pip. Using easy_install instead.
Continuing to install by hand to provide compiler flag to force correct fortran compiler, depending on what blas and lapack are linked against (try ldd /usr/lib/libblas.so). See SciPy's INSTALL.txt file for more information.
These are instructions for building Python 2.5.1 for the various OSes supported.
These instructions should be performed as the glastrm user on the machine bldmac01 (accessible only from within SLAC).
These modules should additionally be installed into python.
These are the instructions to build python 2.5.1-gl4 on the various supported platforms
These instructions should be performed as the glastrm user on the machine bldmac01 (accessible only from within SLAC).
These modules should additionally be installed into python.
These instructions should be performed as the glastrm user
These are instructions for building Python 2.5.1 for the various OSes supported.
These instructions should be performed as the glastrm user
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
to:
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
add_dir_to_list(self.compiler.library_dirs, '/usr/lib')
add_dir_to_list(self.compiler.include_dirs, '/usr/include')
These modules should additionally be installed into python.
These are instructions for building Python 2.6.5 for the various OSes supported.
These instructions should be performed as the glastrm user
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
to:
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
add_dir_to_list(self.compiler.library_dirs, '/usr/lib')
add_dir_to_list(self.compiler.include_dirs, '/usr/include')
Note that 2.6.5 defaults to VS2008 as do the various add-ons
These modules should additionally be installed into python.