Versions Compared

Old Version 77

changes.mady.by.user Chunhong Yoon

Saved on

compared with

New Version Current

changes.mady.by.user Christopher O'Grady

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Note the DS1 and DS2 chambers can move to different locations. Also, Camera1 and Camera2 can move between DS1 and DS2 chambers. Sample chambers, SC1-SC3 are fixed.

Geometries

 

DateWho uploadedExperimentGeometry File NameFile TypeDAQ "Source" Name (Ds1/Ds2)Front/BackCamera

Comment

2017
2020-
06
08-
07
25
dubrovin
yoon
cxi10416/reg/g/psdm/detector/alignment/cspad/calib-cxi-camera1-2014-09-24/calib/CsPad::CalibV1/psana
cxic00318123-end.data cxic00318.geompsana/crystfelCxiDs1.0:
Cspad.0/geometry/geometry-camera1-in-ds1-cxi10416-r0028.data
Jungfrau.0 | jungfrau4MFrontJungfrauIndexed lysozyme run123 with CrystFEL
2019-08-08cpo
geometry-2019-05-06.txtpsana

Epix10ka2MCurrently the only Epix10ka2M that we have. Details about geometry can be found here.
2017-06-29yooncxi10416cxi10416.geomcrystfel
CxiDs1.0:Cspad.0Front
Camera1_V16_20140924?Tuning with geo using cxi10416-r0028 NOTE: x and y tilt angles were applied2016-12-19yooncxi0421653-end.datapsana

Based on dubrovin's psana geometry, tweaked x,y,z detector position with psocake to optimize indexing results.

Prediction refine / geoptimization was NOT performed.

2017-06-07dubrovincxi10416/reg/g/psdm/detector/alignment/cspad/calib-cxi-camera1-2014-09-24/calib/CsPad::CalibV1/CxiDs1.0:Cspad.0
Front CrystFEL predrefine geometry converted to psana format using psgeom
/geometry/geometry-camera1-in-ds1-cxi10416-r0028.datapsanaCxiDs1
2016-09-29yooncxic0315cxic0315.geomcrystfelCxiDs2
.0:Cspad.0
Back 
FrontCamera1_V16_20140924?Tuning with geo using cxi10416-r0028 NOTE: x and y tilt angles were applied
Valid from 21/Sep/16
2016-
09
12-
29
19yoon
cxi11716
cxi04216
cxi11716
53-end.
geom
data
crystfelOptimized using detector-shift
psanaCxiDs1.0:Cspad.0Front
 

CrystFEL predrefine geometry converted to psana format using psgeom
2016-
05-25dubrovinfrom 05/25/reg/g/psdm/Camera2
09-29yooncxic0315cxic0315.geomcrystfelCxiDs2.0:Cspad.0Back
Valid from 21/Sep/16
2016-09-29yooncxi11716cxi11716.geomcrystfelCxiDs1.0:Cspad.0Front
Optimized using detector-shift
2016-05-25dubrovinfrom 05/25/reg/g/psdm/detector/alignment/cspad/calib-cxi-camera2-2016-05-25/calib/CsPad::CalibV1/CxiDs2.0:Cspad.0/geometry/0-end.datapsanaCxiDs2.0:Cspad.0
 

Camera2_V16_20160525?

New optical measurements from 2016-05-25. Quad positions age not aligned

2016-05-25yooncxi06216cxij9415_v5.geom (crystfel) 22-end.data(psana)crystfel/psanaCxiDs1.0:Cspad.0FrontCamera1_V16?

Geometry file optimized using lysozyme by O. Yefanov using intor.

2016-04-26cpocxil8416cxil8416_v2.geom (crystfel) cxil8416_v3.dat (psana)crystfel/psanaCxiDs2.0:Cspad.0FrontCamera2_V16_20160205psana translated from crystfel and moved -200um in x and -100um in y using geo to center lysozyme rings from runs 153,154,155
2016-04-12yooncxi064160-end.datapsanaCxiDg2.0:Cspad2x2.0Back
 

Geometry file optimized using diffraction from a sphere.
2016-02-27yooncxi02416cxi02416_400.geomcrystfel-cxidbCxiDs2.0:Cspad.0FrontCamera2_V16_20160205

Geometry file optimized using lysozyme.

The xxx in cxi02416_xxx.geom represents the camera length.

The detector was translated in x & y w.r.t powder ring and detector_shift script was used to correct for offset.

2016-01-09yooncxic0915

cxic0915_100.geom

cxic0915_200.geom

cxic0915_300.geom

cxic0915_400.geom

cxic0915_480.geom

crystfel-cxidbCxiDs1.0:Cspad.0FrontCamera1_V16_20140924

The refined geometry file for detector calibration by Chuck Yoon.

The xxx in cxic0915_xxx.geom represents the camera length.

The detector was translated in x & y w.r.t powder ring at different detector distances.

2015-12-22valeriocxij9415cxij9415.geomcrystfel-cxidbCxiDs1.0:Cspad.0FrontCamera1_V16_20140924

The refined geometry file for LJ94 from Nadia Zatsepin. PI: Dominik Oberthuer

Thanks to Yun-Xing Wang for the data used for the refinement

2015-12-07yooncxic0915cxic0915-v4.geomcrystfel-cxidbCxiDs1.0:Cspad.0FrontCamera1_V16_20140924

The refined geometry file for detector calibration by Chuck Yoon.

We thank Petra Fromme's team for the phycocynin sample.

2015-11-12yooncxij4915cxij4915-v12.geomcrystfel-cxidbCxiDs1.0:Cspad.0FrontCamera2_V16_20150120

The refined geometry file for L049 using Intor from Nadia Zatsepin. PI: Petra Fromme

Please acknowledge Petra's team for the use of this geometry file in your research if you use any part of this geometry file. Do not remove the history section of the geom file.

2015-07-14valeriocxih9615

/reg/g/psdm/detector/alignment/cspad/openGeom/crystfel/

cxih9615_gv_v1.geom

crystfel-cxidbCxiDs2.0:Cspad.0
 

Camera1_V16_20140924File from 2015-06-27 further refined using more data
2015-06-27valeriocxih9615

/reg/g/psdm/detector/alignment/cspad/openGeom/crystfel/

2015-06-27-cxih9615.geom

crystfel-cxidbCxiDs2.0:Cspad.0
 

Camera1_V16_20140924The refined geometry file for LH96 (Obertheuer beamtime)
2015-06-02dubrovincxih8015/reg/g/psdm/detector/alignment/cspad/calib-cxi-camera1-2014-09-24/calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/geometry/geometry-camera1-in-ds2-cxih8015-r176.datapsanaCxiDs2.0:Cspad.0
 

Camera1_V16_20140924

Generated from /reg/g/psdm/detector/alignment/cspad/calib-cxi-camera1-2014-09-24/2014-09-24-CSPAD-CXI-Camera1-Metrology-corr.txt

Geometry file is deployed for cxi86715

2015-04-01

valerio

cxii6315

/reg/g/psdm/detector/alignment/cspad/openGeom/crystfel/

2015-04-01-cxii6315-ds1.geom

crystfel-cxidbCxiDs1.0:Cspad.0
 

Camera2_V16_20150120 

The refined geometry file for LI63 (Zatsepin beamtime)

Mislabeled in openGeom folder

Caution: geoptimiser v0.6.0 has a bug which could have effected this geom file.

2015-03-26cpo
 

/reg/g/psdm/detector/alignment/cspad/calib-cxi-camera1-2014-09-24/calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/geometry/0-end.data

psanaCxiDs1.0:Cspad.0
 

Camera1_V16_20140924Generated from 2014-09-24-CSPAD-CXI-Camera1-Metrology.xlsx. No quad alignment.
2015-03-26cpo
 

/reg/g/psdm/detector/alignment/cspad/calib-cxi-camera2-2015-01-20/calib/CsPad::CalibV1/CxiDs2.0:Cspad.0/geometry/0-end.data 

psanaCxiDs2.0:Cspad.0
 

Camera2_V16_20150120 Generated from 2015-01-20-CSPAD-CXI-Camera2-Metrology.xlsx. No quad alignment.
2015-03-25

blaj

dubrovin

 

2014-09-24-CSPAD-CXI-Camera1-Metrology.xlsx

/reg/g/psdm/detector/alignment/cspad/calib-cxi-camera1-2014-09-24/2014-09-24-CSPAD-CXI-Camera1-Metrology.txt

xlsx

txt

  


Camera1_V16_20140924

optical metrology

converted using calibman

2015-03-25

blaj

dubrovin

 

2015-01-20-CSPAD-CXI-Camera2-Metrology.xlsx

/reg/g/psdm/detector/alignment/cspad/calib-cxi-camera2-2015-01-20/2015-01-20-CSPAD-CXI-Camera2-Metrology.txt

xlsx

txt

  



Camera2_V16_20150120 

optical metrology

converted using calibman

2015-03-21valeriocxig0915

/reg/g/psdm/detector/alignment/cspad/openGeom/crystfel/

2015-03-21-cxig0915-ds1.geom

crystfel-cxidbCxiDs1.0:Cspad.0
 

Camera2_V16_20150120 

The final refined geometry file for LG09 (Schmidt beamtime) for CXIDB data format.

Mislabeled in openGeom folder

2014-12-17koglin
 

/reg/g/psdm/detector/alignment/cspad/Dg4Cspad_ami_20141217_geo.1e000a00.dat

ami
  


Camera3_V16_20131009

Need to copy over (permissions?)

cp /reg/g/pcds/pds/cspadcalib/geo.1e000a00.dat /reg/g/psdm/detector/alignment/cspad/Dg4Cspad_ami_20141217_geo.1e000a00.dat

...


Camera History

Camera1_V16_20140924

...

  • Metrology file:
  • Out of vacuum camera typically used in XPP and XCS.
  • 2014-12-17 -- Used in CXI at DG4 location in December 2014.
    • XCS concentrator
    • D50 MPOD power
    • Detector quads rotated 90 deg
    • src = 'DetInfo(CxiDg4.0:Cspad.0)'
    • Relative detector Z position:  
      • alias = 'Dg4CsPad_z' 
      • pv = 'CXI:DG4:MMS:16.RBV '

...


References

Documentation on data formats

...

 


MEC

NOTE:  When a new geometry is available it is important for the MEC people to update the appropriate mecana file which has a list of "current" geometries.  An example filename with this information is /reg/g/pcds/package/mecana/mecana-0.0.8/mecana/cspaddata.py

Geometries

 

DateWho uploadedExperimentGeometry File NameFile TypeDAQ "Source" Name (Ds1/Ds2)Front/BackCamera

Comment

2016
2017-
04
10-
21
20dubrovin
from 04/21 2016

valid after 2017/10/20

/reg/g/psdm/detector/alignment/cspad/calib-mec-
2016
2017-
04
10-
21
20/calib/CsPad::CalibV1/MecTargetChamber.0:Cspad.0/geometry/0-end.datapsanaMecTargetChamber.0:Cspad.0
   


Gabriel replaced two 2x2s in Q1 and all four in Q2. See details.
2017-04-22dubrovinvalid after 04/22/217
2016-02-16dubrovinfrom 02/16 to 04/21 2016
/reg/g/psdm/detector/alignment/cspad/calib-mec-
2016
2017-
02
04-
16
22/calib/CsPad::CalibV1/MecTargetChamber.0:Cspad.0/geometry/
0
1-end.data-2017-04-22-CSPAD-MEC-AfterpsanaMecTargetChamber.0:Cspad.0
   


New metrology for quads from Gabriel Blaj
2017-04-22dubrovinvalid before 04/19/2017
2015-12-14  
/reg/g/psdm/detector/alignment/cspad/calib-mec
-2016-02-04/geo-2015-12-14.datapsana   

 

XPP

Geometries

-2017-04-22/calib/CsPad::CalibV1/MecTargetChamber.0:Cspad.0/geometry/0-end.data-2017-04-19-CSPAD-MEC-Before-corrpsanaMecTargetChamber.0:Cspad.0

New metrology for quads from Gabriel Blaj
2016-04-21dubrovinfrom 04/21 2016/reg/
 DateWho uploadedExperimentGeometry File NameFile TypeDAQ "Source" NameFront/BackCamera

Comment

2016-11-22yoonxppn3816xppn3816.geom, 21-end.datacrystfel / psanaXppEndstation.0:Rayonix.0 Rayonix 2016-08-22dubrovin /reg/
g/psdm/detector/alignment/cspad/calib-
xpp
mec-2016-
08
04-
22-camera3
21/calib/CsPad::CalibV1/
XppGon
MecTargetChamber.0:Cspad.0/geometry/0-end.datapsana
XppGon
MecTargetChamber.0:Cspad.0
   



2016-
08
02-
22blaj
16dubrovin
 

2016-08-22-CSPAD-XPP-Camera3-Metrology.xlsx

2016-08-22-CSPAD-XPP-Camera3-Metrology.txt

metrology
from 02/16 to 04/21 2016/reg/g/psdm/detector/alignment/cspad/calib-mec-2016-02-16/calib/CsPad::CalibV1/MecTargetChamber.0:Cspad.0/geometry/0-end.datapsanaMecTargetChamber
XppGon
.0:Cspad.0
 Camera 3applied to all experiments taken after August 19, 20162013-10-09dubrovin 



2015-12-14

/reg/

/reg/

g/psdm/detector/alignment/cspad/calib-

xpp

mec-

2013

2016-

10

02-

09/calib/CsPad::CalibV1/XppGon.0:Cspad.0/geometry/0-end.datapsanaXppGon.0:Cspad.0  

 

2013-10-09

blaj

dubrovin

 

2013-10-09-CSPAD-XPP-Metrology.xlsx

2013-10-09-CSPAD-XPP-Metrology.txt

metrologyXppGon.0:Cspad.0 Camera 3 

MFX

Geometries

...

04/geo-2015-12-14.data

psana



XPP

Geometries


DateWho uploadedExperimentGeometry File NameFile TypeDAQ "Source" NameFront/BackCamera

Comment

2017-11-03dubrovin

/reg/g/psdm/detector/alignment/cspad/calib-xpp-2017-11-03-camera3/calib/CsPad::CalibV1/XppGon.0:Cspad.0/geometry/0-end.data

2017-11-03-CSPAD-XPP-Camera3-Metrology.xlsx

2017-11-03-CSPAD-XPP-Camera3-Metrology.txt

psanaXppGon.0:Cspad.0
Camera 3

camera repaired,

2017-11-03 XPP CSPAD Camera3 Alignment

2017-03-24cpo/dubrovin
/reg/g/psdm/detector/alignment/cspad/calib-xpp-2016-08-22-camera3/calib/CsPad::CalibV1/XppGon.0:Cspad.0/geometry/0-end-corr-2017-03-24.datapsanaXppGon.0:Cspad.0
Cspadthis corrected an error in the optical metrology measurements where the quads were measured in the wrong order, requiring a 90 degree rotation. This camera also moved to XCS and MFX in 2017.
2016-11-22yoonxppn3816xppn3816.geom, 21-end.datacrystfel / psanaXppEndstation.0:Rayonix.0
Rayonix
2016-08-22dubrovin
/reg/g/psdm/detector/alignment/cspad/calib-xpp-2016-08-22-camera3/calib/CsPad::CalibV1/XppGon.0:Cspad.0/geometry/0-end.datapsanaXppGon.0:Cspad.0


2016-08-22

blaj

dubrovin


2016-08-22-CSPAD-XPP-Camera3-Metrology.xlsx

2016-08-22-CSPAD-XPP-Camera3-Metrology.txt

metrologyXppGon.0:Cspad.0
Camera 3applied to all experiments taken after August 19, 2016
2013-10-09dubrovin

/reg/g/psdm/detector/alignment/cspad/calib-xpp-2013-10-09/calib/CsPad::CalibV1/XppGon.0:Cspad.0/geometry/0-end.data

psanaXppGon.0:Cspad.0


2013-10-09

blaj

dubrovin


2013-10-09-CSPAD-XPP-Metrology.xlsx

2013-10-09-CSPAD-XPP-Metrology.txt

metrologyXppGon.0:Cspad.0
Camera 3

MFX

Geometries


DateWho uploadedExperimentGeometry File NameFile TypeDAQ "Source" NameFront/BackCamera

Comment

2020-09-17yoonmfxc00118

214-end.data

mfxc00118.geom

psana / crystfelMfxEndstation.0:Epix10ka2M.0 | epix10k2M
Epix10ka2MGeometry based on lysozyme (indexing rate: 11%) and silver behenate
See 2017-03-24 entry in XPP







2016-11-22yoon

mfx.geom

1-end.data

crystfel / psanaMfxEndstation.0:Rayonix.0
RayonixPsana detector centred in x,y,z using psocake. Converted to crystfel geometry using psgeom.
2017-02-21yoonmfxn1116mfxn1116_v5a.geomcrystfelMfxEndstation.0:Cspad.0
CspadGeoptimized geometry courtesy of Oleksandr Yefanov. This was a Cspad borrowed from XPP.
2020-08-25yoonmfxc003181-end.datapsanaMfxEndstation.0:Epix10ka2M.0 | epix10k2M
Epix10ka2MRecentered on lysozyme rings using Psocake
2021-05-17cpo/brewstermfxlv4318epix_run23.exptdialsepix10k2M

From /reg/d/psdm/mfx/mfxlv4318/results/common/geom/epix_run23.expt

AMO

Geometries


DateWho uploadedExperimentGeometry File NameFile TypeDAQ "Source" NameFront
/BackCamera

Comment

2016-11-22yoon 

mfx.geom

1-end.data

crystfel / psanaMfxEndstation.0:Rayonix.0 RayonixPsana detector centred in x,y,z using psocake. Converted to crystfel geometry using psgeom.2017-02-21yoonmfxn1116mfxn1116_v5a
/BackCamera

Comment

2017-06-16yoon

pnccd-jun16-v1.geom

crystfel
MfxEndstation.0:Cspad.0 CspadGeoptimized geometry courtesy of Oleksandr Yefanov. This was a Cspad borrowed from XPP.


pnCCDOptimized with hdfsee

References

...