Page History
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Note the DS1 and DS2 chambers can move to different locations. Also, Camera1 and Camera2 can move between DS1 and DS2 chambers. Sample chambers, SC1-SC3 are fixed.
Geometries
Date | Who uploaded | Experiment | Geometry File Name | File Type | DAQ "Source" Name (Ds1/Ds2) | Front/Back | Camera | Comment |
---|
2020- |
08- |
25 | yoon |
cxic00318 | 123-end.data cxic00318 |
.geom | psana/crystfel |
CxiDs1.0: |
Jungfrau.0 | jungfrau4M |
Front |
Jungfrau | Indexed lysozyme run123 with CrystFEL | |||||||
2019-08-08 | cpo | geometry-2019-05-06.txt | psana | Epix10ka2M | Currently the only Epix10ka2M that we have. Details about geometry can be found here. | |||
2017-06-29 | yoon | cxi10416 | cxi10416.geom | crystfel | CxiDs1.0 |
:Cspad.0 | Front |
Based on dubrovin's psana geometry, tweaked x,y,z detector position with psocake to optimize indexing results. Prediction refine / geoptimization was NOT performed. | ||
2017-06-07 | dubrovin | cxi10416 |
/reg/g/psdm/detector/alignment/cspad/calib-cxi- |
camera1- |
2014- |
09- |
24/calib/CsPad::CalibV1/ |
CxiDs1.0:Cspad.0/geometry/ |
geometry-camera1-in-ds1-cxi10416-r0028.data | psana |
CxiDs1.0:Cspad.0 |
Front |
Camera1_V16_ |
New optical measurements from 2016-05-25. Quad positions age not aligned
20140924? | Tuning with geo using cxi10416-r0028 NOTE: x and y tilt angles were applied | ||
2016-12-19 | yoon | cxi04216 | 53-end.data |
psana | CxiDs1.0:Cspad.0 | Front |
CrystFEL predrefine geometry converted to psana format using psgeom |
2016- |
09- |
29 |
yoon |
cxic0315 |
cxic0315.geom |
crystfel | CxiDs2.0:Cspad.0 |
Back | Valid from 21/Sep/16 | |||||||
2016-09-29 | yoon | cxi11716 | cxi11716.geom | crystfel | CxiDs1.0:Cspad.0 | Front | Optimized using detector-shift | |
2016-05-25 | dubrovin | from 05/25 | /reg/g/psdm/detector/alignment/cspad/calib-cxi-camera2-2016-05-25/calib/CsPad::CalibV1/ |
CxiDs2.0:Cspad.0 |
/geometry/0-end.data | psana | CxiDs2.0:Cspad.0 | Camera2_V16_ |
Geometry file optimized using lysozyme.
The xxx in cxi02416_xxx.geom represents the camera length.
The detector was translated in x & y w.r.t powder ring and detector_shift script was used to correct for offset.
20160525? | New optical measurements from 2016-05-25. Quad positions age not aligned | |||||||
2016-05-25 | yoon | cxi06216 | cxij9415_v5.geom (crystfel) 22-end.data(psana) | crystfel/psana | CxiDs1.0:Cspad.0 | Front | Camera1_V16? | Geometry file optimized using lysozyme by O. Yefanov using intor. |
2016-04-26 | cpo | cxil8416 | cxil8416_v2.geom (crystfel) cxil8416_v3.dat (psana) | crystfel/psana | CxiDs2 |
.0:Cspad.0 | Front |
Camera2_V16_ |
The refined geometry file for detector calibration by Chuck Yoon.
The xxx in cxic0915_xxx.geom represents the camera length.
The detector was translated in x & y w.r.t powder ring at different detector distances.
The refined geometry file for LJ94 from Nadia Zatsepin. PI: Dominik Oberthuer
Thanks to Yun-Xing Wang for the data used for the refinement
20160205 | psana translated from crystfel and moved -200um in x and -100um in y using geo to center lysozyme rings from runs 153,154,155 | |||||||
2016-04-12 | yoon | cxi06416 | 0-end.data | psana | CxiDg2.0:Cspad2x2.0 | Back | Geometry file optimized using diffraction from a sphere. | |
2016-02-27 | yoon | cxi02416 | cxi02416_400 |
.geom | crystfel-cxidb |
CxiDs2.0:Cspad.0 | Front |
Camera2_V16_ |
20160205 |
The refined geometry file for detector calibration by Chuck Yoon.
We thank Petra Fromme's team for the phycocynin sample.
Geometry file optimized using lysozyme. The xxx in cxi02416_xxx.geom represents the camera length. The detector was translated in x & y w.r.t powder ring and detector_shift script was used to correct for offset. | ||||||||
2016-01-09 | yoon | cxic0915 | crystfel-cxidb | CxiDs1.0:Cspad.0 | Front | Camera1_V16_20140924 | The refined geometry file for detector calibration by Chuck Yoon. The xxx in cxic0915_xxx.geom represents the camera length. The detector was translated in x & y w.r.t powder ring at different detector distances. | |
2015-12-22 | valerio | cxij9415 | cxij9415 |
The refined geometry file for L049 using Intor from Nadia Zatsepin. PI: Petra Fromme
Please acknowledge Petra's team for the use of this geometry file in your research if you use any part of this geometry file. Do not remove the history section of the geom file.
/reg/g/psdm/detector/alignment/cspad/openGeom/crystfel/
cxih9615_gv_v1.geom | crystfel-cxidb |
CxiDs1.0:Cspad.0 |
Front | Camera1_V16_20140924 |
The refined geometry file for LJ94 from Nadia Zatsepin. PI: Dominik Oberthuer Thanks to Yun-Xing Wang for the data used for the refinement | |||
2015-12-07 | yoon | cxic0915 | cxic0915-v4 |
/reg/g/psdm/detector/alignment/cspad/openGeom/crystfel/
2015-06-27-cxih9615.geom | crystfel-cxidb |
CxiDs1.0:Cspad.0 |
Front | Camera1_V16_20140924 | The refined geometry file for |
detector calibration by Chuck Yoon. We thank Petra Fromme's team for the phycocynin sample. |
2015- |
11- |
12 |
yoon |
cxij4915 | cxij4915-v12.geom | crystfel-cxidb |
CxiDs1.0:Cspad.0 |
Front | Camera2 |
_V16_ |
Generated from /reg/g/psdm/detector/alignment/cspad/calib-cxi-camera1-2014-09-24/2014-09-24-CSPAD-CXI-Camera1-Metrology-corr.txt
Geometry file is deployed for cxi86715
20150120 | The refined geometry file for L049 using Intor from Nadia Zatsepin. PI: Petra Fromme Please acknowledge Petra's team for the use of this geometry file in your research if you use any part of this geometry file. Do not remove the history section of the geom file. | |
2015-07-14 | valerio | cxih9615 |
valerio
/reg/g/psdm/detector/alignment/cspad/openGeom/crystfel/ |
crystfel-cxidb |
CxiDs2.0:Cspad.0 |
Camera1_V16_ |
The refined geometry file for LI63 (Zatsepin beamtime)
Mislabeled in openGeom folder
Caution: geoptimiser v0.6.0 has a bug which could have effected this geom file.
20140924 | File from 2015-06-27 further refined using more data | |||||||
2015-06-27 | valerio | cxih9615 | /reg/g/psdm/detector/alignment/cspad/openGeom/crystfel/ | crystfel-cxidb | CxiDs2.0:Cspad.0 | Camera1_V16_20140924 | The refined geometry file for LH96 (Obertheuer beamtime) | |
2015-06-02 | dubrovin | cxih8015 |
/reg/g/psdm/detector/alignment/cspad/calib-cxi-camera1-2014-09-24/calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/geometry/ |
geometry-camera1-in-ds2-cxih8015-r176.data | psana |
CxiDs2.0:Cspad.0 |
Camera1_V16_20140924 | Generated from /reg/g/psdm/detector/alignment/cspad/calib-cxi-camera1-2014-09-24/2014-09-24-CSPAD-CXI-Camera1-Metrology |
-corr.txt Geometry file is deployed for cxi86715 |
2015- |
04- |
01 |
valerio |
cxii6315 | /reg/g/psdm/detector/alignment/cspad |
/openGeom/crystfel/ | crystfel-cxidb | CxiDs1 |
.0:Cspad.0 |
Camera2_V16_20150120 |
The refined geometry file for LI63 (Zatsepin beamtime) Mislabeled in openGeom folder Caution: geoptimiser v0.6.0 has a bug which could have effected this geom file. | |
2015-03- |
dubrovin
26 | cpo |
/reg/g/psdm/detector/alignment/cspad/calib-cxi-camera1-2014-09-24/ |
xlsx
txt
calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/geometry/0-end.data | psana | CxiDs1.0:Cspad.0 | Camera1_V16_20140924 |
optical metrology
converted using calibman
dubrovin
Generated from 2014-09-24-CSPAD-CXI- |
Camera1-Metrology.xlsx. No quad alignment. | |||
2015-03-26 | cpo | /reg/g/psdm/detector/alignment/cspad/calib-cxi-camera2-2015-01-20 |
/calib/CsPad::CalibV1/CxiDs2.0:Cspad.0/geometry/0-end.data | psana | CxiDs2.0:Cspad.0 | Camera2_V16_20150120 | Generated from 2015-01-20-CSPAD-CXI-Camera2-Metrology. |
xlsx |
txt
optical metrology
converted using calibman
. No quad alignment. |
2015-03- |
25 |
dubrovin |
/reg/g/psdm/detector/alignment/cspad/ |
The final refined geometry file for LG09 (Schmidt beamtime) for CXIDB data format.
Mislabeled in openGeom folder
calib-cxi-camera1-2014-09-24/2014-09-24-CSPAD-CXI-Camera1-Metrology.txt | xlsx txt | Camera1_V16_20140924 | optical metrology converted using calibman | ||
2015-03-25 | dubrovin |
/reg/g/psdm/detector/alignment/cspad/ |
calib-cxi-camera2-2015-01-20/2015-01-20-CSPAD-CXI-Camera2-Metrology.txt | xlsx txt | Camera2_V16_20150120 | optical metrology converted using calibman | ||
2015-03-21 | valerio | cxig0915 | /reg/g/ |
Need to copy over (permissions?)
cp /reg/g/pcds/pds/cspadcalib/geo.1e000a00.dat /reg/g/psdm/detector/alignment/cspad/ |
Camera History
Camera1_V16_20140924
openGeom/crystfel/ | crystfel-cxidb | CxiDs1.0:Cspad.0 | Camera2_V16_20150120 | The final refined geometry file for LG09 (Schmidt beamtime) for CXIDB data format. Mislabeled in openGeom folder | ||||
2014-12-17 | koglin | /reg/g/psdm/detector/alignment/cspad/Dg4Cspad_ami_20141217_geo.1e000a00.dat | ami | Camera3_V16_20131009 | Need to copy over (permissions?) cp /reg/g/pcds/pds/cspadcalib/geo.1e000a00.dat /reg/g/psdm/detector/alignment/cspad/Dg4Cspad_ami_20141217_geo.1e000a00.dat |
Camera History
Camera1_V16_20140924
- Optical Metrology file: Optical Metrology file:
- 2014-09-24-CXI-Camera1-Metrology.xlsx <https://confluence.slac.stanford.edu/download/attachments/107749188/2014-09-24-CXI-DS1-Metrology.xlsx?version=1&modificationDate=1414457576000&api=v2>
- 2014-09-24-CXI-Camera1-Metrology.xlsx
- <https://confluence.slac.stanford.edu/download/attachments/107749188/2014-09-24-CXI-DS1-Metrology.xlsx?version=1&modificationDate=1414457576000&api=v2>
- 2014-09-24 -- fixed - fixed and moved to DS2 chamber
- mixed quadrants:
- 3 old A boards (Q0, Q1, Q2), 4/40
- 1 new board (Q3), 3/19
- mixed quadrants:
- 2014-11-19 -- DS1 @ DSD
- moved back to DS1 chamber in DSD location
- Used for PCS, IH and cxig3616
- 2015-01-10 -- DS1 @ DSC location
- Used for cxig1515
- src = 'DetInfo(CxiDs1.0:Cspad.0)'
- alias = DscCsPad
- Relative detector Z position:
- alias = 'DscCsPad_z'
- pv = 'CXI:DS1:MMS:06.RBV'
- Used for cxig1515
- 2015-03-17 -- DS2 @ DSD location
- Camera 1 was moved to DS2 chamber at DSD location.
- The previously broken D50 Concentrator was replaced with older concentrator.
- Quadrants 2 and 0 were swapped.
- Back detector (generally not used) for SC1 experiments from 2015-03-18 to 2015-05-04
- src = 'DetInfo(CxiDs2.0:Cspad.0)'
- alias = DsdCsPad
- Relative detector Z position:
- alias = 'DsdCsPad_z'
- pv = 'CXI:DS2:MMS:06.RBV'
- Camera 1 was moved to DS2 chamber at DSD location.
- 2015-05-04 -- DS2 @ DSD
- Cables for Camera 1 in DS2 corrected and collimator pipe removed from front DS1
- Back detector for SC1 experiments from 2015-05-04 to 2015-05-17
- src = 'DetInfo(CxiDs2.0:Cspad.0)'
- alias = DsdCsPad
- Relative detector Z position:
- alias = 'DsdCsPad_z'
- pv = 'CXI:DS2:MMS:06.RBV'
- 2015-12-07 -- DS1 @ DSC
- Camera1 was moved from DS2 (at DSD) to DS1 (at DSC) because Camera2 in DS1 was damaged.
- src = 'DetInfo(CxiDs1.0:Cspad.0)'
- alias = DscCsPad
- Relative detector Z position:
- alias = 'DscCsPad_z'
- pv = 'CXI:DS1:MMS:06.RBV'
- Camera1 was moved from DS2 (at DSD) to DS1 (at DSC) because Camera2 in DS1 was damaged.
...
- Metrology file:
- Out of vacuum camera typically used in XPP and XCS.
- 2014-12-17 -- Used in CXI at DG4 location in December 2014.
- XCS concentrator
- D50 MPOD power
- Detector quads rotated 90 deg
- src = 'DetInfo(CxiDg4.0:Cspad.0)'
- Relative detector Z position:
- alias = 'Dg4CsPad_z'
- pv = 'CXI:DG4:MMS:16.RBV '
...
References
Documentation on data formats
...
- cheetah - github, Anton Barty
- dxtbx-the diffraction experiment toolbox, Aaron Brewster
- XFEL Detectors and ImageCIF
- Diffraction Geometry, D.J.Thomas
- Calibration Management Tool (calibman)
- CSPAD Alignment - alignment summary
- psgeom - T.J. Lane converter between geometry formats in github
MEC
NOTE: When a new geometry is available it is important for the MEC people to update the appropriate mecana file which has a list of "current" geometries. An example filename with this information is /reg/g/pcds/package/mecana/mecana-0.0.8/mecana/cspaddata.py
Geometries
this information is /reg/g/pcds/package/mecana/mecana-0.0.8/mecana/cspaddata.py
Geometries
Date | Who uploaded | Experiment | Geometry File Name | File Type | DAQ "Source" Name (Ds1/Ds2) | Front/Back | Camera | Comment |
---|---|---|---|---|---|---|---|---|
2017-10-20 | dubrovin | valid after 2017/10/20 | /reg/g/psdm/detector/alignment/cspad/calib-mec-2017-10-20/calib/CsPad::CalibV1/MecTargetChamber.0:Cspad.0/geometry/0-end.data | psana | MecTargetChamber.0:Cspad.0 | Gabriel replaced two 2x2s in Q1 and all four in Q2. See details. | ||
2017-04-22 | dubrovin | valid after 04/22/217 | /reg/g/psdm/detector/alignment/cspad/calib-mec-2017-04-22/calib/CsPad::CalibV1/MecTargetChamber.0:Cspad.0/geometry/1-end.data-2017-04-22-CSPAD-MEC-After | psana | MecTargetChamber.0:Cspad.0 | New metrology for quads from Gabriel Blaj | ||
2017-04-22 | dubrovin | valid before 04/19/2017 | /reg/g/psdm/detector/alignment/cspad/calib-mec-2017-04-22/calib/CsPad::CalibV1/MecTargetChamber.0:Cspad.0/geometry/0-end.data-2017-04-19-CSPAD-MEC-Before-corr | psana | MecTargetChamber.0:Cspad.0 | New metrology for quads from Gabriel Blaj | ||
2016-04-21 | dubrovin | from 04/21 2016 | /reg/g/psdm/detector/alignment/cspad/calib-mec-2016-04-21/calib/CsPad::CalibV1/MecTargetChamber.0:Cspad.0/geometry/0-end.data | psana | MecTargetChamber.0:Cspad.0 | |||
2016-02-16 | dubrovin | from 02/16 to 04/21 2016 | /reg/g/psdm/detector/alignment/cspad/calib-mec-2016-02-16/calib/CsPad::CalibV1/MecTargetChamber.0:Cspad.0/geometry/0-end.data | psana | MecTargetChamber.0:Cspad.0 | |||
2015-12-14 | /reg/g/psdm/detector/alignment/cspad/calib-mec-2016-02-04/geo-2015-12-14.data | psana |
XPP
Geometries
Date | Who uploaded | Experiment | Geometry File Name | File Type | DAQ "Source" Name | Front/Back | Camera | Comment |
---|---|---|---|---|---|---|---|---|
2017-11-03 | dubrovin | /reg/g/psdm/detector/alignment/cspad/calib-xpp-2017-11-03-camera3/calib/CsPad::CalibV1/XppGon.0:Cspad.0/geometry/0-end.data | psana | XppGon.0:Cspad.0 | Camera 3 | camera repaired, | ||
2017-03-24 | cpo/dubrovin |
Comment
/reg/g/psdm/detector/alignment/cspad/calib- |
xpp-2016-08- |
22- |
camera3/calib/CsPad::CalibV1/ |
XppGon.0:Cspad.0 |
/geometry/0-end-corr-2017-03-24.data | psana | XppGon.0:Cspad.0 | Cspad | this corrected an error in the optical metrology measurements where the quads were measured in the wrong order, requiring a 90 degree rotation. This camera also moved to XCS and MFX in 2017. | |
2016-11-22 | yoon | xppn3816 | xppn3816.geom, 21-end.data | crystfel / psana |
XppEndstation.0: |
Rayonix.0 |
Rayonix | ||
2016-08-22 | dubrovin |
/reg/g/psdm/detector/alignment/cspad/calib- |
xpp-2016- |
08-22-camera3/calib/CsPad::CalibV1/XppGon.0:Cspad.0/geometry/0-end.data | psana |
XPP
Geometries
XppGon.0:Cspad.0 | ||||||||
2016-08-22 | dubrovin | metrology | XppGon.0:Cspad.0 | Camera 3 | applied to all experiments taken after August 19 , 2016 | |||
2013-10-09 | dubrovin | /reg/g/psdm/detector/alignment/cspad/calib-xpp-2013-10-09/calib/CsPad::CalibV1/XppGon.0:Cspad.0/geometry/0-end.data | psana | XppGon.0:Cspad.0 | ||||
2013-10-09 | dubrovin | metrology |
Comment
XppGon.0:Cspad.0 |
dubrovin
applied to all experiments taken after August
19
,
2016
/reg/g/psdm/detector/alignment/cspad/calib-xpp-2013-10-09/calib/CsPad::CalibV1/XppGon.0:Cspad.0/geometry/0-end.data
dubrovin
MFX
Geometries
Camera 3 |
MFX
Geometries
Date | Who uploaded | Experiment | Geometry File Name | File Type | DAQ "Source" Name | Front/Back | Camera | Comment |
---|---|---|---|---|---|---|---|---|
2020-09-17 | yoon | mfxc00118 | psana / crystfel | MfxEndstation.0:Epix10ka2M.0 | epix10k2M | Epix10ka2M | Geometry based on lysozyme (indexing rate: 11%) and silver behenate | ||
See 2017-03-24 entry in XPP | ||||||||
2016-11-22 | yoon | crystfel / psana | MfxEndstation.0:Rayonix.0 | Rayonix | Psana detector centred in x,y,z using psocake. Converted to crystfel geometry using psgeom. | |||
2017-02-21 | yoon | mfxn1116 | mfxn1116_v5a.geom | crystfel | MfxEndstation.0:Cspad.0 | Cspad | Geoptimized geometry courtesy of Oleksandr Yefanov. This was a Cspad borrowed from XPP. | |
2020-08-25 | yoon | mfxc00318 | 1-end.data | psana | MfxEndstation.0:Epix10ka2M.0 | epix10k2M | Epix10ka2M | Recentered on lysozyme rings using Psocake | |
2021-05-17 | cpo/brewster | mfxlv4318 | epix_run23.expt | dials | epix10k2M | From /reg/d/psdm/mfx/mfxlv4318/results/common/geom/epix_run23.expt |
AMO
Geometries
...
Date | Who uploaded | Experiment | Geometry File Name | File Type | DAQ "Source" Name | Front |
---|
Comment
/Back | Camera | Comment | ||
---|---|---|---|---|
2017-06-16 | yoon | crystfel |
pnCCD | Optimized with hdfsee |
References
- Some slides on SPI pnCCD geometry
- CSPAD Alignment
- CSPAD Geometry and Alignment
- Detector Geometry
- CSPad metrology and calibration files, links
- Calibration Management Tool
...