Table of Contents |
---|
2.7.8
Starting to try Anaconda Python distribution: Anaconda-2.1.0-Linux-x86_64.sh
[/u/gl/heather/anaconda] >>> /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat6-x86_64-64bit-gcc44/python/2.7.8
PREFIX=/afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat6-x86_64-64bit-gcc44/python/2.7.8
installing: python-2.7.8-1 ...
installing: conda-3.7.0-py27_0 ...
installing: conda-build-1.8.2-py27_0 ...
installing: _license-1.1-py27_0 ...
installing: abstract-rendering-0.5.1-np19py27_0 ...
installing: argcomplete-0.8.1-py27_0 ...
installing: astropy-0.4.2-np19py27_0 ...
installing: atom-0.3.9-py27_0 ...
installing: beautiful-soup-4.3.2-py27_0 ...
installing: binstar-0.7.1-py27_0 ...
installing: bitarray-0.8.1-py27_0 ...
installing: blaze-0.6.3-np19py27_0 ...
installing: blz-0.6.2-np19py27_0 ...
installing: bokeh-0.6.1-np19py27_0 ...
installing: boto-2.32.1-py27_0 ...
installing: cairo-1.12.2-2 ...
installing: casuarius-1.1-py27_0 ...
installing: cdecimal-2.3-py27_0 ...
installing: cffi-0.8.6-py27_0 ...
installing: chaco-4.4.1-np19py27_0 ...
installing: colorama-0.3.1-py27_0 ...
installing: configobj-5.0.6-py27_0 ...
installing: cryptography-0.5.4-py27_0 ...
installing: curl-7.38.0-0 ...
installing: cython-0.21-py27_0 ...
installing: cytoolz-0.7.0-py27_0 ...
installing: datashape-0.3.0-np19py27_1 ...
installing: dateutil-2.1-py27_2 ...
installing: decorator-3.4.0-py27_0 ...
installing: docutils-0.12-py27_0 ...
installing: dynd-python-0.6.5-np19py27_0 ...
installing: enable-4.3.0-np19py27_2 ...
installing: enaml-0.9.8-py27_0 ...
installing: flask-0.10.1-py27_1 ...
installing: freetype-2.4.10-0 ...
installing: future-0.13.1-py27_0 ...
installing: futures-2.1.6-py27_0 ...
installing: gevent-1.0.1-py27_0 ...
installing: gevent-websocket-0.9.3-py27_0 ...
installing: greenlet-0.4.4-py27_0 ...
installing: grin-1.2.1-py27_1 ...
installing: h5py-2.3.1-np19py27_0 ...
installing: hdf5-1.8.13-0 ...
installing: ipython-2.2.0-py27_0 ...
installing: ipython-notebook-2.2.0-py27_0 ...
installing: ipython-qtconsole-2.2.0-py27_0 ...
installing: itsdangerous-0.24-py27_0 ...
installing: jdcal-1.0-py27_0 ...
installing: jinja2-2.7.3-py27_1 ...
installing: jpeg-8d-0 ...
installing: kiwisolver-0.1.3-py27_0 ...
installing: lcms-1.19-0 ...
installing: libdynd-0.6.5-0 ...
installing: libffi-3.0.13-0 ...
installing: libpng-1.5.13-1 ...
installing: libsodium-0.4.5-0 ...
installing: libtiff-4.0.2-1 ...
installing: libxml2-2.9.0-0 ...
installing: libxslt-1.1.28-0 ...
installing: llvm-3.3-0 ...
installing: llvmpy-0.12.7-py27_0 ...
installing: lxml-3.4.0-py27_0 ...
installing: markupsafe-0.23-py27_0 ...
installing: matplotlib-1.4.0-np19py27_0 ...
installing: mock-1.0.1-py27_0 ...
installing: mpi4py-1.3-py27_0 ...
installing: mpich2-1.4.1p1-0 ...
installing: multipledispatch-0.4.7-py27_0 ...
installing: networkx-1.9.1-py27_0 ...
installing: nltk-3.0.0-np19py27_0 ...
installing: nose-1.3.4-py27_0 ...
installing: numba-0.14.0-np19py27_0 ...
installing: numexpr-2.3.1-np19py27_0 ...
installing: numpy-1.9.0-py27_0 ...
installing: openpyxl-1.8.5-py27_0 ...
installing: openssl-1.0.1h-1 ...
installing: pandas-0.14.1-np19py27_0 ...
installing: patsy-0.3.0-np19py27_0 ...
installing: pep8-1.5.7-py27_0 ...
installing: pil-1.1.7-py27_1 ...
installing: pip-1.5.6-py27_0 ...
installing: pixman-0.26.2-0 ...
installing: ply-3.4-py27_0 ...
installing: psutil-2.1.1-py27_0 ...
installing: py-1.4.25-py27_0 ...
installing: py2cairo-1.10.0-py27_1 ...
installing: pycosat-0.6.1-py27_0 ...
installing: pycparser-2.10-py27_0 ...
installing: pycrypto-2.6.1-py27_0 ...
installing: pycurl-7.19.5-py27_1 ...
installing: pyface-4.4.0-py27_0 ...
installing: pyflakes-0.8.1-py27_0 ...
installing: pygments-1.6-py27_0 ...
installing: pyopenssl-0.14-py27_0 ...
installing: pyparsing-2.0.1-py27_0 ...
installing: pyqt-4.10.4-py27_0 ...
installing: pytables-3.1.1-np19py27_1 ...
installing: pytest-2.6.3-py27_0 ...
installing: pytz-2014.7-py27_0 ...
installing: pyyaml-3.11-py27_0 ...
installing: pyzmq-14.3.1-py27_0 ...
installing: qt-4.8.5-0 ...
installing: readline-6.2-2 ...
installing: redis-2.6.9-0 ...
installing: redis-py-2.9.1-py27_0 ...
installing: requests-2.4.1-py27_0 ...
installing: rope-0.9.4-py27_1 ...
installing: runipy-0.1.1-py27_0 ...
installing: scikit-image-0.10.1-np19py27_0 ...
installing: scikit-learn-0.15.2-np19py27_0 ...
installing: scipy-0.14.0-np19py27_0 ...
installing: setuptools-5.8-py27_0 ...
installing: sip-4.15.5-py27_0 ...
installing: six-1.8.0-py27_0 ...
installing: sockjs-tornado-1.0.1-py27_0 ...
installing: sphinx-1.2.3-py27_0 ...
installing: spyder-2.3.1-py27_0 ...
installing: spyder-app-2.3.1-py27_0 ...
installing: sqlalchemy-0.9.7-py27_0 ...
installing: sqlite-3.8.4.1-0 ...
installing: ssl_match_hostname-3.4.0.2-py27_0 ...
installing: statsmodels-0.5.0-np19py27_2 ...
installing: sympy-0.7.5-py27_0 ...
installing: system-5.8-1 ...
installing: theano-0.6.0-np19py27_0 ...
installing: tk-8.5.15-0 ...
installing: toolz-0.7.0-py27_0 ...
installing: tornado-4.0.2-py27_0 ...
installing: traits-4.4.0-py27_0 ...
installing: traitsui-4.4.0-py27_0 ...
installing: ujson-1.33-py27_0 ...
installing: unicodecsv-0.9.4-py27_0 ...
installing: util-linux-2.21-0 ...
installing: werkzeug-0.9.6-py27_1 ...
installing: xlrd-0.9.3-py27_0 ...
installing: xlsxwriter-0.5.7-py27_0 ...
installing: xlwt-0.7.5-py27_0 ...
installing: yaml-0.1.4-0 ...
installing: zeromq-4.0.4-0 ...
installing: zlib-1.2.7-0 ...
installing: anaconda-2.1.0-np19py27_0 ...
installing: _cache-0.0-x0 ...
after Anaconda installation is finished, add bin directory to your PATH and then install additional packages needed for Fermi:
- pip install pyfits (3.3)
- pip install pywcs (1.12)
- pip install APLpy (0.9.14)
- 4Suite-XML 1.0.2, using the tarball available and then run: python setup.py install
pywcsgrid2-0.1b2 tarball should be within our GLAST_EXT area
extractcd
python setup.py install
- pip install healpy (1.8.4)
Anaconda2-4.2.0
Code Block | ||||
---|---|---|---|---|
| ||||
installing: python-2.7.12-1 ...
installing: _license-1.1-py27_1 ...
installing: _nb_ext_conf-0.3.0-py27_0 ...
installing: alabaster-0.7.9-py27_0 ...
installing: anaconda-clean-1.0.0-py27_0 ...
installing: anaconda-client-1.5.1-py27_0 ...
installing: anaconda-navigator-1.3.1-py27_0 ...
installing: argcomplete-1.0.0-py27_1 ...
installing: astroid-1.4.7-py27_0 ...
installing: astropy-1.2.1-np111py27_0 ...
installing: babel-2.3.4-py27_0 ...
installing: backports-1.0-py27_0 ...
installing: backports_abc-0.4-py27_0 ...
installing: beautifulsoup4-4.5.1-py27_0 ...
installing: bitarray-0.8.1-py27_0 ...
installing: blaze-0.10.1-py27_0 ...
installing: bokeh-0.12.2-py27_0 ...
installing: boto-2.42.0-py27_0 ...
installing: bottleneck-1.1.0-np111py27_0 ...
installing: cairo-1.12.18-6 ...
installing: cdecimal-2.3-py27_2 ...
installing: cffi-1.7.0-py27_0 ...
installing: chest-0.2.3-py27_0 ...
installing: click-6.6-py27_0 ...
installing: cloudpickle-0.2.1-py27_0 ...
installing: clyent-1.2.2-py27_0 ...
installing: colorama-0.3.7-py27_0 ...
installing: configobj-5.0.6-py27_0 ...
installing: configparser-3.5.0-py27_0 ...
installing: contextlib2-0.5.3-py27_0 ...
installing: cryptography-1.5-py27_0 ...
installing: curl-7.49.0-1 ...
installing: cycler-0.10.0-py27_0 ...
installing: cython-0.24.1-py27_0 ...
installing: cytoolz-0.8.0-py27_0 ...
installing: dask-0.11.0-py27_0 ...
installing: datashape-0.5.2-py27_0 ...
installing: dbus-1.10.10-0 ...
installing: decorator-4.0.10-py27_0 ...
installing: dill-0.2.5-py27_0 ...
installing: docutils-0.12-py27_2 ...
installing: dynd-python-0.7.2-py27_0 ...
installing: entrypoints-0.2.2-py27_0 ...
installing: enum34-1.1.6-py27_0 ...
installing: et_xmlfile-1.0.1-py27_0 ...
installing: expat-2.1.0-0 ...
installing: fastcache-1.0.2-py27_1 ...
installing: filelock-2.0.6-py27_0 ...
installing: flask-0.11.1-py27_0 ...
installing: flask-cors-2.1.2-py27_0 ...
installing: fontconfig-2.11.1-6 ...
installing: freetype-2.5.5-1 ...
installing: funcsigs-1.0.2-py27_0 ...
installing: functools32-3.2.3.2-py27_0 ...
installing: futures-3.0.5-py27_0 ...
installing: get_terminal_size-1.0.0-py27_0 ...
installing: gevent-1.1.2-py27_0 ...
installing: glib-2.43.0-1 ...
installing: greenlet-0.4.10-py27_0 ...
installing: grin-1.2.1-py27_3 ...
installing: gst-plugins-base-1.8.0-0 ...
installing: gstreamer-1.8.0-0 ...
installing: h5py-2.6.0-np111py27_2 ...
installing: harfbuzz-0.9.39-1 ...
installing: hdf5-1.8.17-1 ...
installing: heapdict-1.0.0-py27_1 ...
installing: icu-54.1-0 ...
installing: idna-2.1-py27_0 ...
installing: imagesize-0.7.1-py27_0 ...
installing: ipaddress-1.0.16-py27_0 ...
installing: ipykernel-4.5.0-py27_0 ...
installing: ipython-5.1.0-py27_0 ...
installing: ipython_genutils-0.1.0-py27_0 ...
installing: ipywidgets-5.2.2-py27_0 ...
installing: itsdangerous-0.24-py27_0 ...
installing: jbig-2.1-0 ...
installing: jdcal-1.2-py27_1 ...
installing: jedi-0.9.0-py27_1 ...
installing: jinja2-2.8-py27_1 ...
installing: jpeg-8d-2 ...
installing: jsonschema-2.5.1-py27_0 ...
installing: jupyter-1.0.0-py27_3 ...
installing: jupyter_client-4.4.0-py27_0 ...
installing: jupyter_console-5.0.0-py27_0 ...
installing: jupyter_core-4.2.0-py27_0 ...
installing: lazy-object-proxy-1.2.1-py27_0 ...
installing: libdynd-0.7.2-0 ...
installing: libffi-3.2.1-0 ...
installing: libgcc-4.8.5-2 ...
installing: libgfortran-3.0.0-1 ...
installing: libpng-1.6.22-0 ...
installing: libsodium-1.0.10-0 ...
installing: libtiff-4.0.6-2 ...
installing: libxcb-1.12-0 ...
installing: libxml2-2.9.2-0 ...
installing: libxslt-1.1.28-0 ...
installing: llvmlite-0.13.0-py27_0 ...
installing: locket-0.2.0-py27_1 ...
installing: lxml-3.6.4-py27_0 ...
installing: markupsafe-0.23-py27_2 ...
installing: matplotlib-1.5.3-np111py27_0 ...
installing: mistune-0.7.3-py27_0 ...
installing: mkl-11.3.3-0 ...
installing: mkl-service-1.1.2-py27_2 ...
installing: mpmath-0.19-py27_1 ...
installing: multipledispatch-0.4.8-py27_0 ...
installing: nb_anacondacloud-1.2.0-py27_0 ...
installing: nb_conda-2.0.0-py27_0 ...
installing: nb_conda_kernels-2.0.0-py27_0 ...
installing: nbconvert-4.2.0-py27_0 ...
installing: nbformat-4.1.0-py27_0 ...
installing: nbpresent-3.0.2-py27_0 ...
installing: networkx-1.11-py27_0 ...
installing: nltk-3.2.1-py27_0 ...
installing: nose-1.3.7-py27_1 ...
installing: notebook-4.2.3-py27_0 ...
installing: numba-0.28.1-np111py27_0 ...
installing: numexpr-2.6.1-np111py27_0 ...
installing: numpy-1.11.1-py27_0 ...
installing: odo-0.5.0-py27_1 ...
installing: openpyxl-2.3.2-py27_0 ...
installing: openssl-1.0.2j-0 ...
installing: pandas-0.18.1-np111py27_0 ...
installing: partd-0.3.6-py27_0 ...
installing: patchelf-0.9-0 ...
installing: path.py-8.2.1-py27_0 ...
installing: pathlib2-2.1.0-py27_0 ...
installing: patsy-0.4.1-py27_0 ...
installing: pep8-1.7.0-py27_0 ...
installing: pexpect-4.0.1-py27_0 ...
installing: pickleshare-0.7.4-py27_0 ...
installing: pillow-3.3.1-py27_0 ...
installing: pip-8.1.2-py27_0 ...
installing: pixman-0.32.6-0 ...
installing: pkginfo-1.3.2-py27_0 ...
installing: ply-3.9-py27_0 ...
installing: prompt_toolkit-1.0.3-py27_0 ...
installing: psutil-4.3.1-py27_0 ...
installing: ptyprocess-0.5.1-py27_0 ...
installing: py-1.4.31-py27_0 ...
installing: pyasn1-0.1.9-py27_0 ...
installing: pycairo-1.10.0-py27_0 ...
installing: pycosat-0.6.1-py27_1 ...
installing: pycparser-2.14-py27_1 ...
installing: pycrypto-2.6.1-py27_4 ...
installing: pycurl-7.43.0-py27_0 ...
installing: pyflakes-1.3.0-py27_0 ...
installing: pygments-2.1.3-py27_0 ...
installing: pylint-1.5.4-py27_1 ...
installing: pyopenssl-16.0.0-py27_0 ...
installing: pyparsing-2.1.4-py27_0 ...
installing: pyqt-5.6.0-py27_0 ...
installing: pytables-3.2.3.1-np111py27_0 ...
installing: pytest-2.9.2-py27_0 ...
installing: python-dateutil-2.5.3-py27_0 ...
installing: pytz-2016.6.1-py27_0 ...
installing: pyyaml-3.12-py27_0 ...
installing: pyzmq-15.4.0-py27_0 ...
installing: qt-5.6.0-0 ...
installing: qtawesome-0.3.3-py27_0 ...
installing: qtconsole-4.2.1-py27_1 ...
installing: qtpy-1.1.2-py27_0 ...
installing: readline-6.2-2 ...
installing: redis-3.2.0-0 ...
installing: redis-py-2.10.5-py27_0 ...
installing: requests-2.11.1-py27_0 ...
installing: rope-0.9.4-py27_1 ...
installing: scikit-image-0.12.3-np111py27_1 ...
installing: scikit-learn-0.17.1-np111py27_2 ...
installing: scipy-0.18.1-np111py27_0 ...
installing: setuptools-27.2.0-py27_0 ...
installing: simplegeneric-0.8.1-py27_1 ...
installing: singledispatch-3.4.0.3-py27_0 ...
installing: sip-4.18-py27_0 ...
installing: six-1.10.0-py27_0 ...
installing: snowballstemmer-1.2.1-py27_0 ...
installing: sockjs-tornado-1.0.3-py27_0 ...
installing: sphinx-1.4.6-py27_0 ...
installing: spyder-3.0.0-py27_0 ...
installing: sqlalchemy-1.0.13-py27_0 ...
installing: sqlite-3.13.0-0 ...
installing: ssl_match_hostname-3.4.0.2-py27_1 ...
installing: statsmodels-0.6.1-np111py27_1 ...
installing: sympy-1.0-py27_0 ...
installing: terminado-0.6-py27_0 ...
installing: tk-8.5.18-0 ...
installing: toolz-0.8.0-py27_0 ...
installing: tornado-4.4.1-py27_0 ...
installing: traitlets-4.3.0-py27_0 ...
installing: unicodecsv-0.14.1-py27_0 ...
installing: wcwidth-0.1.7-py27_0 ...
installing: werkzeug-0.11.11-py27_0 ...
installing: wheel-0.29.0-py27_0 ...
installing: widgetsnbextension-1.2.6-py27_0 ...
installing: wrapt-1.10.6-py27_0 ...
installing: xlrd-1.0.0-py27_0 ...
installing: xlsxwriter-0.9.3-py27_0 ...
installing: xlwt-1.1.2-py27_0 ...
installing: xz-5.2.2-0 ...
installing: yaml-0.1.6-0 ...
installing: zeromq-4.1.4-0 ...
installing: zlib-1.2.8-3 ...
installing: anaconda-4.2.0-np111py27_0 ...
installing: ruamel_yaml-0.11.14-py27_0 ...
installing: conda-4.2.9-py27_0 ...
installing: conda-build-2.0.2-py27_0 ...
Python 2.7.12 :: Continuum Analytics, Inc.
creating default environment... |
- pip install pyfits (3.4)
- pip install pywcs (1.12)
- pip install APLpy (1.1.1) which requires astropy
4Suite-XML 1.0.2, using the tarball available and then run: python setup.py installskipped since 4Suite-XML would not installpywcsgrid2-0.1b2 tarball should be within our GLAST_EXT area
extractcd
python setup.py install
- conda install -c conda-forge healpy (1.9.1-np111py27_0)
- pmw
- wcsaxes (0.6-py27_0) http://wcsaxes.readthedocs.org/en/latest/installation.html
conda install -c openastronomy wcsaxes
2.7.12
Started with Anaconda2-4.0.0.sh, which install python 2.7.11, however installing healpy via conda results in an upgrade to python 2.7.12
2.7.11 (never officially released)
Anaconda Python (python 2.7.11)
Code Block |
---|
[/u/gl/heather/anaconda2] >>> /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat6-x86_64-64bit-gcc44/python/2.7.11
PREFIX=/afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat6-x86_64-64bit-gcc44/python/2.7.11
installing: _cache-0.0-py27_x0 ...
installing: python-2.7.11-0 ...
installing: alabaster-0.7.7-py27_0 ...
installing: anaconda-client-1.4.0-py27_0 ...
installing: anaconda-navigator-1.1.0-py27_0 ...
installing: argcomplete-1.0.0-py27_1 ...
installing: astropy-1.1.2-np110py27_0 ...
installing: babel-2.2.0-py27_0 ...
installing: backports_abc-0.4-py27_0 ...
installing: beautifulsoup4-4.4.1-py27_0 ...
installing: bitarray-0.8.1-py27_0 ...
installing: blaze-0.9.1-py27_0 ...
installing: bokeh-0.11.1-py27_0 ...
installing: boto-2.39.0-py27_0 ...
installing: bottleneck-1.0.0-np110py27_0 ...
installing: cairo-1.12.18-6 ...
installing: cdecimal-2.3-py27_0 ...
installing: cffi-1.5.2-py27_0 ...
installing: chest-0.2.3-py27_0 ...
installing: cloudpickle-0.1.1-py27_0 ...
installing: clyent-1.2.1-py27_0 ...
installing: colorama-0.3.7-py27_0 ...
installing: conda-manager-0.3.1-py27_0 ...
installing: configobj-5.0.6-py27_0 ...
installing: cryptography-1.3-py27_0 ...
installing: curl-7.45.0-0 ...
installing: cycler-0.10.0-py27_0 ...
installing: cython-0.23.4-py27_0 ...
installing: cytoolz-0.7.5-py27_0 ...
installing: dask-0.8.1-py27_0 ...
installing: datashape-0.5.1-py27_0 ...
installing: decorator-4.0.9-py27_0 ...
installing: dill-0.2.4-py27_0 ...
installing: docutils-0.12-py27_0 ...
installing: dynd-python-0.7.2-py27_0 ...
installing: enum34-1.1.2-py27_0 ...
installing: et_xmlfile-1.0.1-py27_0 ...
installing: fastcache-1.0.2-py27_0 ...
installing: flask-0.10.1-py27_1 ...
installing: flask-cors-2.1.2-py27_0 ...
installing: fontconfig-2.11.1-5 ...
installing: freetype-2.5.5-0 ...
installing: funcsigs-0.4-py27_0 ...
installing: futures-3.0.3-py27_0 ...
installing: gevent-1.1.0-py27_0 ...
installing: greenlet-0.4.9-py27_0 ...
installing: grin-1.2.1-py27_1 ...
installing: h5py-2.5.0-np110py27_4 ...
installing: hdf5-1.8.15.1-2 ...
installing: heapdict-1.0.0-py27_0 ...
installing: idna-2.0-py27_0 ...
installing: ipaddress-1.0.14-py27_0 ...
installing: ipykernel-4.3.1-py27_0 ...
installing: ipython-4.1.2-py27_1 ...
installing: ipython_genutils-0.1.0-py27_0 ...
installing: ipywidgets-4.1.1-py27_0 ...
installing: itsdangerous-0.24-py27_0 ...
installing: jbig-2.1-0 ...
installing: jdcal-1.2-py27_0 ...
installing: jedi-0.9.0-py27_0 ...
installing: jinja2-2.8-py27_0 ...
installing: jpeg-8d-0 ...
installing: jsonschema-2.4.0-py27_0 ...
installing: jupyter-1.0.0-py27_2 ...
installing: jupyter_client-4.2.2-py27_0 ...
installing: jupyter_console-4.1.1-py27_0 ...
installing: jupyter_core-4.1.0-py27_0 ...
installing: libdynd-0.7.2-0 ...
installing: libffi-3.0.13-0 ...
installing: libgfortran-3.0-0 ...
installing: libpng-1.6.17-0 ...
installing: libsodium-1.0.3-0 ...
installing: libtiff-4.0.6-1 ...
installing: libxml2-2.9.2-0 ...
installing: libxslt-1.1.28-0 ...
installing: llvmlite-0.9.0-py27_0 ...
installing: locket-0.2.0-py27_0 ...
installing: lxml-3.6.0-py27_0 ...
installing: markupsafe-0.23-py27_0 ...
installing: matplotlib-1.5.1-np110py27_0 ...
installing: mistune-0.7.2-py27_0 ...
installing: mkl-11.3.1-0 ...
installing: mkl-service-1.1.2-py27_0 ...
installing: mpmath-0.19-py27_0 ...
installing: multipledispatch-0.4.8-py27_0 ...
installing: nbconvert-4.1.0-py27_0 ...
installing: nbformat-4.0.1-py27_0 ...
installing: networkx-1.11-py27_0 ...
installing: nltk-3.2-py27_0 ...
installing: nose-1.3.7-py27_0 ...
installing: notebook-4.1.0-py27_1 ...
installing: numba-0.24.0-np110py27_0 ...
installing: numexpr-2.5-np110py27_0 ...
installing: numpy-1.10.4-py27_1 ...
installing: odo-0.4.2-py27_0 ...
installing: openpyxl-2.3.2-py27_0 ...
installing: openssl-1.0.2g-0 ...
installing: pandas-0.18.0-np110py27_0 ...
installing: partd-0.3.2-py27_1 ...
installing: patchelf-0.8-0 ...
installing: path.py-8.1.2-py27_1 ...
installing: patsy-0.4.0-np110py27_0 ...
installing: pep8-1.7.0-py27_0 ...
installing: pexpect-4.0.1-py27_0 ...
installing: pickleshare-0.5-py27_0 ...
installing: pillow-3.1.1-py27_0 ...
installing: pip-8.1.1-py27_1 ...
installing: pixman-0.32.6-0 ...
installing: ply-3.8-py27_0 ...
installing: psutil-4.1.0-py27_0 ...
installing: ptyprocess-0.5-py27_0 ...
installing: py-1.4.31-py27_0 ...
installing: pyasn1-0.1.9-py27_0 ...
installing: pycairo-1.10.0-py27_0 ...
installing: pycosat-0.6.1-py27_0 ...
installing: pycparser-2.14-py27_0 ...
installing: pycrypto-2.6.1-py27_0 ...
installing: pycurl-7.19.5.3-py27_0 ...
installing: pyflakes-1.1.0-py27_0 ...
installing: pygments-2.1.1-py27_0 ...
installing: pyopenssl-0.15.1-py27_2 ...
installing: pyparsing-2.0.3-py27_0 ...
installing: pyqt-4.11.4-py27_1 ...
installing: pytables-3.2.2-np110py27_1 ...
installing: pytest-2.8.5-py27_0 ...
installing: python-dateutil-2.5.1-py27_0 ...
installing: pytz-2016.2-py27_0 ...
installing: pyyaml-3.11-py27_1 ...
installing: pyzmq-15.2.0-py27_0 ...
installing: qt-4.8.7-1 ...
installing: qtawesome-0.3.2-py27_0 ...
installing: qtconsole-4.2.0-py27_0 ...
installing: qtpy-1.0-py27_0 ...
installing: readline-6.2-2 ...
installing: redis-2.6.9-0 ...
installing: redis-py-2.10.3-py27_0 ...
installing: requests-2.9.1-py27_0 ...
installing: rope-0.9.4-py27_1 ...
installing: scikit-image-0.12.3-np110py27_0 ...
installing: scikit-learn-0.17.1-np110py27_0 ...
installing: scipy-0.17.0-np110py27_2 ...
installing: setuptools-20.3-py27_0 ...
installing: simplegeneric-0.8.1-py27_0 ...
installing: singledispatch-3.4.0.3-py27_0 ...
installing: sip-4.16.9-py27_0 ...
installing: six-1.10.0-py27_0 ...
installing: snowballstemmer-1.2.1-py27_0 ...
installing: sockjs-tornado-1.0.1-py27_0 ...
installing: sphinx-1.3.5-py27_0 ...
installing: sphinx_rtd_theme-0.1.9-py27_0 ...
installing: spyder-2.3.8-py27_1 ...
installing: sqlalchemy-1.0.12-py27_0 ...
installing: sqlite-3.9.2-0 ...
installing: ssl_match_hostname-3.4.0.2-py27_0 ...
installing: statsmodels-0.6.1-np110py27_0 ...
installing: sympy-1.0-py27_0 ...
installing: terminado-0.5-py27_1 ...
installing: tk-8.5.18-0 ...
installing: toolz-0.7.4-py27_0 ...
installing: tornado-4.3-py27_0 ...
installing: traitlets-4.2.1-py27_0 ...
installing: unicodecsv-0.14.1-py27_0 ...
installing: util-linux-2.21-0 ...
installing: werkzeug-0.11.4-py27_0 ...
installing: wheel-0.29.0-py27_0 ...
installing: xlrd-0.9.4-py27_0 ...
installing: xlsxwriter-0.8.4-py27_0 ...
installing: xlwt-1.0.0-py27_0 ...
installing: xz-5.0.5-1 ...
installing: yaml-0.1.6-0 ...
installing: zeromq-4.1.3-0 ...
installing: zlib-1.2.8-0 ...
installing: anaconda-4.0.0-np110py27_0 ...
installing: conda-4.0.5-py27_0 ...
installing: conda-build-1.20.0-py27_0 ...
installing: conda-env-2.4.5-py27_0 ...
Python 2.7.11 :: Continuum Analytics, Inc.
creating default environment...
installation finished. |
- pip install pyfits (3.4)
- pip install pywcs (1.12)
- pip install APLpy (1.0) which requires astropy
- 4Suite-XML 1.0.2, using the tarball available and then run: python setup.py install
pywcsgrid2-0.1b2 tarball should be within our GLAST_EXT area
extractcd
python setup.py install
- conda install -c conda-forge healpy (1.9.1)
- pmw
- wcsaxes (0.6-py27_0) http://wcsaxes.readthedocs.org/en/latest/installation.html
conda install -c openastronomy wcsaxes
2.7.10
Trying Anaconda Python 2.3.0, which installs python 2.7.10
Panel |
---|
installing: python-2.7.10-0 ... installing: conda-3.14.1-py27_0 ... installing: conda-build-1.14.1-py27_0 ... installing: conda-env-2.2.3-py27_0 ... installing: _license-1.1-py27_0 ... installing: abstract-rendering-0.5.1-np19py27_0 ... installing: alabaster-0.7.3-py27_0 ... installing: argcomplete-0.8.9-py27_0 ... installing: astropy-1.0.3-np19py27_0 ... installing: babel-1.3-py27_0 ... installing: bcolz-0.9.0-np19py27_0 ... installing: beautiful-soup-4.3.2-py27_0 ... installing: binstar-0.11.0-py27_0 ... installing: bitarray-0.8.1-py27_0 ... installing: blaze-core-0.8.0-np19py27_0 ... installing: blz-0.6.2-np19py27_1 ... installing: bokeh-0.9.0-np19py27_0 ... installing: boto-2.38.0-py27_0 ... installing: bottleneck-1.0.0-np19py27_0 ... installing: cairo-1.12.18-4 ... installing: cdecimal-2.3-py27_0 ... installing: certifi-14.05.14-py27_0 ... installing: cffi-1.1.0-py27_0 ... installing: clyent-0.3.4-py27_0 ... installing: colorama-0.3.3-py27_0 ... installing: configobj-5.0.6-py27_0 ... installing: cryptography-0.9.1-py27_0 ... installing: curl-7.43.0-0 ... installing: cython-0.22.1-py27_0 ... installing: cytoolz-0.7.3-py27_0 ... installing: datashape-0.4.5-np19py27_0 ... installing: decorator-3.4.2-py27_0 ... installing: docutils-0.12-py27_0 ... installing: dynd-python-0.6.5-np19py27_0 ... installing: enum34-1.0.4-py27_0 ... installing: fastcache-1.0.2-py27_0 ... installing: flask-0.10.1-py27_1 ... installing: fontconfig-2.11.1-4 ... installing: freetype-2.5.2-2 ... installing: funcsigs-0.4-py27_0 ... installing: gevent-1.0.1-py27_0 ... installing: gevent-websocket-0.9.3-py27_0 ... installing: greenlet-0.4.7-py27_0 ... installing: grin-1.2.1-py27_1 ... installing: h5py-2.5.0-np19py27_3 ... installing: hdf5-1.8.15.1-1 ... installing: idna-2.0-py27_0 ... installing: ipaddress-1.0.7-py27_0 ... installing: ipython-3.2.0-py27_0 ... installing: ipython-notebook-3.2.0-py27_0 ... installing: ipython-qtconsole-3.2.0-py27_0 ... installing: itsdangerous-0.24-py27_0 ... installing: jdcal-1.0-py27_0 ... installing: jedi-0.8.1-py27_0 ... installing: jinja2-2.7.3-py27_1 ... installing: jpeg-8d-0 ... installing: jsonschema-2.4.0-py27_0 ... installing: libdynd-0.6.5-0 ... installing: libffi-3.0.13-0 ... installing: libpng-1.6.17-0 ... installing: libsodium-0.4.5-0 ... installing: libtiff-4.0.2-1 ... installing: libxml2-2.9.2-0 ... installing: libxslt-1.1.28-0 ... installing: llvmlite-0.5.0-py27_0 ... installing: lxml-3.4.4-py27_0 ... installing: markupsafe-0.23-py27_0 ... installing: matplotlib-1.4.3-np19py27_2 ... installing: mistune-0.5.1-py27_1 ... installing: mock-1.0.1-py27_0 ... installing: multipledispatch-0.4.7-py27_0 ... installing: networkx-1.9.1-py27_0 ... installing: nltk-3.0.3-np19py27_0 ... installing: nose-1.3.7-py27_0 ... installing: numba-0.19.1-np19py27_0 ... installing: numexpr-2.4.3-np19py27_0 ... installing: numpy-1.9.2-py27_0 ... installing: odo-0.3.2-np19py27_0 ... installing: openpyxl-1.8.5-py27_0 ... installing: openssl-1.0.1k-1 ... installing: pandas-0.16.2-np19py27_0 ... installing: patsy-0.3.0-np19py27_0 ... installing: pep8-1.6.2-py27_0 ... installing: pillow-2.8.2-py27_0 ... installing: pip-7.0.3-py27_0 ... installing: pixman-0.26.2-0 ... installing: ply-3.6-py27_0 ... installing: psutil-2.2.1-py27_0 ... installing: ptyprocess-0.4-py27_0 ... installing: py-1.4.27-py27_0 ... installing: py2cairo-1.10.0-py27_2 ... installing: pyasn1-0.1.7-py27_0 ... installing: pycosat-0.6.1-py27_0 ... installing: pycparser-2.14-py27_0 ... installing: pycrypto-2.6.1-py27_0 ... installing: pycurl-7.19.5.1-py27_2 ... installing: pyflakes-0.9.2-py27_0 ... installing: pygments-2.0.2-py27_0 ... installing: pyopenssl-0.15.1-py27_1 ... installing: pyparsing-2.0.3-py27_0 ... installing: pyqt-4.11.3-py27_1 ... installing: pytables-3.2.0-np19py27_0 ... installing: pytest-2.7.1-py27_0 ... installing: python-dateutil-2.4.2-py27_0 ... installing: pytz-2015.4-py27_0 ... installing: pyyaml-3.11-py27_1 ... installing: pyzmq-14.7.0-py27_0 ... installing: qt-4.8.6-3 ... installing: readline-6.2-2 ... installing: redis-2.6.9-0 ... installing: redis-py-2.10.3-py27_0 ... installing: requests-2.7.0-py27_0 ... installing: rope-0.9.4-py27_1 ... installing: runipy-0.1.3-py27_0 ... installing: scikit-image-0.11.3-np19py27_0 ... installing: scikit-learn-0.16.1-np19py27_0 ... installing: scipy-0.15.1-np19py27_0 ... installing: setuptools-17.1.1-py27_0 ... installing: sip-4.16.5-py27_0 ... installing: six-1.9.0-py27_0 ... installing: snowballstemmer-1.2.0-py27_0 ... installing: sockjs-tornado-1.0.1-py27_0 ... installing: sphinx-1.3.1-py27_0 ... installing: sphinx_rtd_theme-0.1.7-py27_0 ... installing: spyder-2.3.5.2-py27_0 ... installing: spyder-app-2.3.5.2-py27_0 ... installing: sqlalchemy-1.0.5-py27_0 ... installing: sqlite-3.8.4.1-1 ... installing: ssl_match_hostname-3.4.0.2-py27_0 ... installing: statsmodels-0.6.1-np19py27_0 ... installing: sympy-0.7.6-py27_0 ... installing: system-5.8-2 ... installing: terminado-0.5-py27_0 ... installing: theano-0.7.0-np19py27_0 ... installing: tk-8.5.18-0 ... installing: toolz-0.7.2-py27_0 ... installing: tornado-4.2-py27_0 ... installing: ujson-1.33-py27_0 ... installing: unicodecsv-0.9.4-py27_0 ... installing: util-linux-2.21-0 ... installing: werkzeug-0.10.4-py27_0 ... installing: xlrd-0.9.3-py27_0 ... installing: xlsxwriter-0.7.3-py27_0 ... installing: xlwt-1.0.0-py27_0 ... installing: yaml-0.1.6-0 ... installing: zeromq-4.0.5-0 ... installing: zlib-1.2.8-0 ... installing: anaconda-2.3.0-np19py27_0 ... installing: _cache-0.0-x0 ... Python 2.7.10 :: Continuum Analytics, Inc. creating default environment... linktype: copy linking: _cache-0.0-x0 linking: _license-1.1-py27_0 linking: abstract-rendering-0.5.1-np19py27_0 linking: alabaster-0.7.3-py27_0 linking: anaconda-2.3.0-np19py27_0 linking: argcomplete-0.8.9-py27_0 linking: astropy-1.0.3-np19py27_0 linking: babel-1.3-py27_0 linking: bcolz-0.9.0-np19py27_0 linking: beautiful-soup-4.3.2-py27_0 linking: binstar-0.11.0-py27_0 linking: bitarray-0.8.1-py27_0 linking: blaze-core-0.8.0-np19py27_0 linking: blz-0.6.2-np19py27_1 linking: bokeh-0.9.0-np19py27_0 linking: boto-2.38.0-py27_0 linking: bottleneck-1.0.0-np19py27_0 linking: cairo-1.12.18-4 linking: cdecimal-2.3-py27_0 linking: certifi-14.05.14-py27_0 linking: cffi-1.1.0-py27_0 linking: clyent-0.3.4-py27_0 linking: colorama-0.3.3-py27_0 linking: conda-3.14.1-py27_0 linking: conda-build-1.14.1-py27_0 linking: conda-env-2.2.3-py27_0 linking: configobj-5.0.6-py27_0 linking: cryptography-0.9.1-py27_0 linking: curl-7.43.0-0 linking: cython-0.22.1-py27_0 linking: cytoolz-0.7.3-py27_0 linking: datashape-0.4.5-np19py27_0 linking: decorator-3.4.2-py27_0 linking: docutils-0.12-py27_0 linking: dynd-python-0.6.5-np19py27_0 linking: enum34-1.0.4-py27_0 linking: fastcache-1.0.2-py27_0 linking: flask-0.10.1-py27_1 linking: fontconfig-2.11.1-4 linking: freetype-2.5.2-2 linking: funcsigs-0.4-py27_0 linking: gevent-1.0.1-py27_0 linking: gevent-websocket-0.9.3-py27_0 linking: greenlet-0.4.7-py27_0 linking: grin-1.2.1-py27_1 linking: h5py-2.5.0-np19py27_3 linking: hdf5-1.8.15.1-1 linking: idna-2.0-py27_0 linking: ipaddress-1.0.7-py27_0 linking: ipython-3.2.0-py27_0 linking: ipython-notebook-3.2.0-py27_0 linking: ipython-qtconsole-3.2.0-py27_0 linking: itsdangerous-0.24-py27_0 linking: jdcal-1.0-py27_0 linking: jedi-0.8.1-py27_0 linking: jinja2-2.7.3-py27_1 linking: jpeg-8d-0 linking: jsonschema-2.4.0-py27_0 linking: libdynd-0.6.5-0 linking: libffi-3.0.13-0 linking: libpng-1.6.17-0 linking: libsodium-0.4.5-0 linking: libtiff-4.0.2-1 linking: libxml2-2.9.2-0 linking: libxslt-1.1.28-0 linking: llvmlite-0.5.0-py27_0 linking: lxml-3.4.4-py27_0 linking: markupsafe-0.23-py27_0 linking: matplotlib-1.4.3-np19py27_2 linking: mistune-0.5.1-py27_1 linking: mock-1.0.1-py27_0 linking: multipledispatch-0.4.7-py27_0 linking: networkx-1.9.1-py27_0 linking: nltk-3.0.3-np19py27_0 linking: nose-1.3.7-py27_0 linking: numba-0.19.1-np19py27_0 linking: numexpr-2.4.3-np19py27_0 linking: numpy-1.9.2-py27_0 linking: odo-0.3.2-np19py27_0 linking: openpyxl-1.8.5-py27_0 linking: openssl-1.0.1k-1 linking: pandas-0.16.2-np19py27_0 linking: patsy-0.3.0-np19py27_0 linking: pep8-1.6.2-py27_0 linking: pillow-2.8.2-py27_0 linking: pip-7.0.3-py27_0 linking: pixman-0.26.2-0 linking: ply-3.6-py27_0 linking: psutil-2.2.1-py27_0 linking: ptyprocess-0.4-py27_0 linking: py-1.4.27-py27_0 linking: py2cairo-1.10.0-py27_2 linking: pyasn1-0.1.7-py27_0 linking: pycosat-0.6.1-py27_0 linking: pycparser-2.14-py27_0 linking: pycrypto-2.6.1-py27_0 linking: pycurl-7.19.5.1-py27_2 linking: pyflakes-0.9.2-py27_0 linking: pygments-2.0.2-py27_0 linking: pyopenssl-0.15.1-py27_1 linking: pyparsing-2.0.3-py27_0 linking: pyqt-4.11.3-py27_1 linking: pytables-3.2.0-np19py27_0 linking: pytest-2.7.1-py27_0 linking: python-2.7.10-0 linking: python-dateutil-2.4.2-py27_0 linking: pytz-2015.4-py27_0 linking: pyyaml-3.11-py27_1 linking: pyzmq-14.7.0-py27_0 linking: qt-4.8.6-3 linking: readline-6.2-2 linking: redis-2.6.9-0 linking: redis-py-2.10.3-py27_0 linking: requests-2.7.0-py27_0 linking: rope-0.9.4-py27_1 linking: runipy-0.1.3-py27_0 linking: scikit-image-0.11.3-np19py27_0 linking: scikit-learn-0.16.1-np19py27_0 linking: scipy-0.15.1-np19py27_0 linking: setuptools-17.1.1-py27_0 linking: sip-4.16.5-py27_0 linking: six-1.9.0-py27_0 linking: snowballstemmer-1.2.0-py27_0 linking: sockjs-tornado-1.0.1-py27_0 linking: sphinx-1.3.1-py27_0 linking: sphinx_rtd_theme-0.1.7-py27_0 linking: spyder-2.3.5.2-py27_0 linking: spyder-app-2.3.5.2-py27_0 linking: sqlalchemy-1.0.5-py27_0 linking: sqlite-3.8.4.1-1 linking: ssl_match_hostname-3.4.0.2-py27_0 linking: statsmodels-0.6.1-np19py27_0 linking: sympy-0.7.6-py27_0 linking: system-5.8-2 linking: terminado-0.5-py27_0 linking: theano-0.7.0-np19py27_0 linking: tk-8.5.18-0 linking: toolz-0.7.2-py27_0 linking: tornado-4.2-py27_0 linking: ujson-1.33-py27_0 linking: unicodecsv-0.9.4-py27_0 linking: util-linux-2.21-0 linking: werkzeug-0.10.4-py27_0 linking: xlrd-0.9.3-py27_0 linking: xlsxwriter-0.7.3-py27_0 linking: xlwt-1.0.0-py27_0 linking: yaml-0.1.6-0 linking: zeromq-4.0.5-0 linking: zlib-1.2.8-0 installation finished. |
Still need to install pyfits, healpy, pmwcs
after Anaconda installation is finished, add bin directory to your PATH and then install additional packages needed for Fermi:
- pip install pyfits (3.4)
- pip install pywcs (1.12)
- pip install APLpy (0.9.14) which requires astropy
- 4Suite-XML 1.0.2, using the tarball available and then run: python setup.py install
pywcsgrid2-0.1b2 tarball should be within our GLAST_EXT area
extractcd
python setup.py install
- pip install healpy (1.8.4)
- pmw
- wcsaxes http://wcsaxes.readthedocs.org/en/latest/installation.html
pip install wcsaxes - jupyter
redhat7
pip install pyfits (3.4)
pip install pywcs (1.12)
APLpy 0.9.14 from source via python setup.py install
Panel | ||
---|---|---|
| ||
The following packages will be UPDATED:
astropy: 1.0.3-np19py27_0 --> 1.1.2-np110py27_0 (soft-link) conda: 3.14.1-py27_0 --> 4.0.5-py27_0 (soft-link) conda-env: 2.2.3-py27_0 --> 2.4.5-py27_0 (soft-link) numpy: 1.9.2-py27_0 --> 1.10.4-py27_1 (soft-link) openssl: 1.0.1k-1 --> 1.0.2g-0 (soft-link) pip: 7.0.3-py27_0 --> 8.1.1-py27_0 (soft-link) python: 2.7.10-0 --> 2.7.11-0 (soft-link) requests: 2.7.0-py27_0 --> 2.9.1-py27_0 (soft-link) setuptools: 17.1.1-py27_0 --> 20.3-py27_0 (soft-link) sqlite: 3.8.4.1-1 --> 3.9.2-0 (soft-link)
|
- 4Suite-XML 1.0.2, using the tarball available and then run: python setup.py install
pywcsgrid2-0.1b2 tarball should be within our GLAST_EXT area
extractcd
python setup.py install
- pip install healpy (1.9.1)
- pmw
Pmw 1.3.3
Home page: http://pmw.sourceforge.net/
Note Pmw 2.0.0 is for Python 3.0 while the 1.3 series is meant for Python 2.x. The Pmw-2.0.0 tarball includes both versions and during the installation chooses the correct one to install based on the version of python.
- Download the source code from: http://sourceforge.net/projects/pmw/files/
- Unpack the tarball
- python setup.py install
- Test by running: python All.py in the site-packages/Pmw/Pmw_1_3_3/tests directory
2.7.8
Starting to try Anaconda Python distribution: Anaconda-2.1.0-Linux-x86_64.sh
[/u/gl/heather/anaconda] >>> /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat6-x86_64-64bit-gcc44/python/2.7.8
PREFIX=/afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat6-x86_64-64bit-gcc44/python/2.7.8
installing: python-2.7.8-1 ...
installing: conda-3.7.0-py27_0 ...
installing: conda-build-1.8.2-py27_0 ...
installing: _license-1.1-py27_0 ...
installing: abstract-rendering-0.5.1-np19py27_0 ...
installing: argcomplete-0.8.1-py27_0 ...
installing: astropy-0.4.2-np19py27_0 ...
installing: atom-0.3.9-py27_0 ...
installing: beautiful-soup-4.3.2-py27_0 ...
installing: binstar-0.7.1-py27_0 ...
installing: bitarray-0.8.1-py27_0 ...
installing: blaze-0.6.3-np19py27_0 ...
installing: blz-0.6.2-np19py27_0 ...
installing: bokeh-0.6.1-np19py27_0 ...
installing: boto-2.32.1-py27_0 ...
installing: cairo-1.12.2-2 ...
installing: casuarius-1.1-py27_0 ...
installing: cdecimal-2.3-py27_0 ...
installing: cffi-0.8.6-py27_0 ...
installing: chaco-4.4.1-np19py27_0 ...
installing: colorama-0.3.1-py27_0 ...
installing: configobj-5.0.6-py27_0 ...
installing: cryptography-0.5.4-py27_0 ...
installing: curl-7.38.0-0 ...
installing: cython-0.21-py27_0 ...
installing: cytoolz-0.7.0-py27_0 ...
installing: datashape-0.3.0-np19py27_1 ...
installing: dateutil-2.1-py27_2 ...
installing: decorator-3.4.0-py27_0 ...
installing: docutils-0.12-py27_0 ...
installing: dynd-python-0.6.5-np19py27_0 ...
installing: enable-4.3.0-np19py27_2 ...
installing: enaml-0.9.8-py27_0 ...
installing: flask-0.10.1-py27_1 ...
installing: freetype-2.4.10-0 ...
installing: future-0.13.1-py27_0 ...
installing: futures-2.1.6-py27_0 ...
installing: gevent-1.0.1-py27_0 ...
installing: gevent-websocket-0.9.3-py27_0 ...
installing: greenlet-0.4.4-py27_0 ...
installing: grin-1.2.1-py27_1 ...
installing: h5py-2.3.1-np19py27_0 ...
installing: hdf5-1.8.13-0 ...
installing: ipython-2.2.0-py27_0 ...
installing: ipython-notebook-2.2.0-py27_0 ...
installing: ipython-qtconsole-2.2.0-py27_0 ...
installing: itsdangerous-0.24-py27_0 ...
installing: jdcal-1.0-py27_0 ...
installing: jinja2-2.7.3-py27_1 ...
installing: jpeg-8d-0 ...
installing: kiwisolver-0.1.3-py27_0 ...
installing: lcms-1.19-0 ...
installing: libdynd-0.6.5-0 ...
installing: libffi-3.0.13-0 ...
installing: libpng-1.5.13-1 ...
installing: libsodium-0.4.5-0 ...
installing: libtiff-4.0.2-1 ...
installing: libxml2-2.9.0-0 ...
installing: libxslt-1.1.28-0 ...
installing: llvm-3.3-0 ...
installing: llvmpy-0.12.7-py27_0 ...
installing: lxml-3.4.0-py27_0 ...
installing: markupsafe-0.23-py27_0 ...
installing: matplotlib-1.4.0-np19py27_0 ...
installing: mock-1.0.1-py27_0 ...
installing: mpi4py-1.3-py27_0 ...
installing: mpich2-1.4.1p1-0 ...
installing: multipledispatch-0.4.7-py27_0 ...
installing: networkx-1.9.1-py27_0 ...
installing: nltk-3.0.0-np19py27_0 ...
installing: nose-1.3.4-py27_0 ...
installing: numba-0.14.0-np19py27_0 ...
installing: numexpr-2.3.1-np19py27_0 ...
installing: numpy-1.9.0-py27_0 ...
installing: openpyxl-1.8.5-py27_0 ...
installing: openssl-1.0.1h-1 ...
installing: pandas-0.14.1-np19py27_0 ...
installing: patsy-0.3.0-np19py27_0 ...
installing: pep8-1.5.7-py27_0 ...
installing: pil-1.1.7-py27_1 ...
installing: pip-1.5.6-py27_0 ...
installing: pixman-0.26.2-0 ...
installing: ply-3.4-py27_0 ...
installing: psutil-2.1.1-py27_0 ...
installing: py-1.4.25-py27_0 ...
installing: py2cairo-1.10.0-py27_1 ...
installing: pycosat-0.6.1-py27_0 ...
installing: pycparser-2.10-py27_0 ...
installing: pycrypto-2.6.1-py27_0 ...
installing: pycurl-7.19.5-py27_1 ...
installing: pyface-4.4.0-py27_0 ...
installing: pyflakes-0.8.1-py27_0 ...
installing: pygments-1.6-py27_0 ...
installing: pyopenssl-0.14-py27_0 ...
installing: pyparsing-2.0.1-py27_0 ...
installing: pyqt-4.10.4-py27_0 ...
installing: pytables-3.1.1-np19py27_1 ...
installing: pytest-2.6.3-py27_0 ...
installing: pytz-2014.7-py27_0 ...
installing: pyyaml-3.11-py27_0 ...
installing: pyzmq-14.3.1-py27_0 ...
installing: qt-4.8.5-0 ...
installing: readline-6.2-2 ...
installing: redis-2.6.9-0 ...
installing: redis-py-2.9.1-py27_0 ...
installing: requests-2.4.1-py27_0 ...
installing: rope-0.9.4-py27_1 ...
installing: runipy-0.1.1-py27_0 ...
installing: scikit-image-0.10.1-np19py27_0 ...
installing: scikit-learn-0.15.2-np19py27_0 ...
installing: scipy-0.14.0-np19py27_0 ...
installing: setuptools-5.8-py27_0 ...
installing: sip-4.15.5-py27_0 ...
installing: six-1.8.0-py27_0 ...
installing: sockjs-tornado-1.0.1-py27_0 ...
installing: sphinx-1.2.3-py27_0 ...
installing: spyder-2.3.1-py27_0 ...
installing: spyder-app-2.3.1-py27_0 ...
installing: sqlalchemy-0.9.7-py27_0 ...
installing: sqlite-3.8.4.1-0 ...
installing: ssl_match_hostname-3.4.0.2-py27_0 ...
installing: statsmodels-0.5.0-np19py27_2 ...
installing: sympy-0.7.5-py27_0 ...
installing: system-5.8-1 ...
installing: theano-0.6.0-np19py27_0 ...
installing: tk-8.5.15-0 ...
installing: toolz-0.7.0-py27_0 ...
installing: tornado-4.0.2-py27_0 ...
installing: traits-4.4.0-py27_0 ...
installing: traitsui-4.4.0-py27_0 ...
installing: ujson-1.33-py27_0 ...
installing: unicodecsv-0.9.4-py27_0 ...
installing: util-linux-2.21-0 ...
installing: werkzeug-0.9.6-py27_1 ...
installing: xlrd-0.9.3-py27_0 ...
installing: xlsxwriter-0.5.7-py27_0 ...
installing: xlwt-0.7.5-py27_0 ...
installing: yaml-0.1.4-0 ...
installing: zeromq-4.0.4-0 ...
installing: zlib-1.2.7-0 ...
installing: anaconda-2.1.0-np19py27_0 ...
installing: _cache-0.0-x0 ...
after Anaconda installation is finished, add bin directory to your PATH and then install additional packages needed for Fermi:
- pip install pyfits (3.3)
- pip install pywcs (1.12)
- pip install APLpy (0.9.14)
- 4Suite-XML 1.0.2, using the tarball available and then run: python setup.py install
pywcsgrid2-0.1b2 tarball should be within our GLAST_EXT area
extractcd
python setup.py install
- pip install healpy (1.8.4)
2.7.6-gl2
redhat6-x86_64bit-gcc44
- Obtain python source from python.org
- Ungzip/Untar source
- Change directory to Python-2.7.6
- Set the environment variable EXTRA_CFLAGS to "-fPIC -fwrapv"
- Change directory to Python-2.7.2
- edit setup.py, in detect_modules() change the lines from:
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
to:
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
add_dir_to_list(self.compiler.library_dirs, '/usr/lib')
add_dir_to_list(self.compiler.include_dirs, '/usr/include') - setenv LDFLAGS -fPIC; setenv CPPFLAGS -fPIC; setenv CFLAGS -m64 -fPIC need to force 64 bit build even on rhel6-64
- Execute ./configure --prefix /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat5-i386-32bit-gcc41/python/2.7.6
- Execute make
- Execute make install
- Leave and erase the current directory (Python-2.7.6)
- Make sure to unset the env variables set up abovecd
pip (also installs setuptools)
- curl -O https://bootstrap.pypa.io/get-pip.py
- python get-pip.py
nose 1.3.7
unit test framework necessary for running numpy and scipy unit tests
- pip install nose
numpy 1.8.1
Still installing by hand to include --fcompiler flag to force correct fortran compiler to be used. This is dictated by whatever blas and lapack are linked against. For more information, see the numpy INSTALL.txt file.
- Download numpy-1.8.1.tar.gz
- Extract numpy-1.8.1.tar.gz
- Change directory to numpy-1.8.1
- python setup.py build --fcompiler=gnu95 (for gfortran.)
It seems the rhel4s have blas and lapack linked against g77, while rhel5 & rhel6 use gfortran - python setup.py install
- Run the test routine by starting up python and doing:
import numpy
numpy.test() - Leave and erase the current directory (numpy-1.8.1)
PyFITS - 3.3
pip install pyfits
matplotlib 1.4.3
pip install matplotlib
which also installed tornado, python-dateutil, pyparsing, six, and backport.ssl-match-hostname
pywcs-1.12
pip install pywcsS
astropy-1.0.4
pip install astropy
APLpy-0.9.11 (requires astropy)
pip install APLpy
4Suite XML - 1.0.2
The 4Suite-XML web site no longer works via easy_install. Installing by hand
python setup.py install
SciPy - 0.14.0
Continuing to install by hand to provide compiler flag to force correct fortran compiler, depending on what blas and lapack are linked against (try ldd /usr/lib/libblas.so). See SciPy's INSTALL.txt file for more information.
Download scipy-0.14.1.tar.gz from http://www.scipy.org/
Extract scipy-0.14.0.tar.gz
Change directory to scipy-0.14.0
Execute python setup.py config_fc --fcompiler=gnu95 install
Leave and erase scipy-0.14.0
Test by starting up python and doing:
import scipy
scipy.test() (NOTE this segfaulted on rhel5-32.. hoping that's not a big deal)
pywcsgrid2-0.1b2
Download from https://github.com/leejjoon/pywcsgrid2/downloads
Extract
cd
python setup.py install
PyYAML 3.11
curl -O http://pyyaml.org/download/pyyaml/PyYAML-3.11.tar.gz
python setup.py install
healpy 1.8.6
see: https://pypi.python.org/pypi/healpy
pip install healpy
virtualenv-13.1.2
https://virtualenv.pypa.io/en/latest/virtualenv.html#installation
pip install virtualenv
How to use: http://docs.python-guide.org/en/latest/dev/virtualenvs/
Pmw 1.3.3
Home page: http://pmw.sourceforge.net/
Note Pmw 2.0.0 is for Python 3.0 while the 1.3 series is meant for Python 2.x. The Pmw-2.0.0 tarball includes both versions and during the installation chooses the correct one to install based on the version of python.
- Download the source code from: http://sourceforge.net/projects/pmw/files/
- Unpack the tarball
- python setup.py install
- Test by running: python All.py in the site-packages/Pmw/Pmw_1_3_3/tests directory
iPython - 4.0.0
We do not distribute IPython any long due to ongoing issues with hard-coded paths associated with IPython. Instead, we manually create the tar.gz file and copy it over to u35, then install IPython for use at SLAC in the GLAST_EXT copy.
pip install ipython
Run the iptest located in python's bin directory.
to support HTML notebooks:
pyzmq
zeromq 4.1.3
download from http://zeromq.org/area:download
curl -O http://download.zeromq.org/zeromq-4.1.3.tar.gz
zeromq depends on libsodium https://download.libsodium.org/doc/installation/index.html
curl -O https://download.libsodium.org/libsodium/releases/libsodium-1.0.3.tar.gz
uncompress libsodium.tar.gz
./configure --prefix=location
make && make check
make install
I chose to store the libsodium installation as part of my zeromq install in $GLAST_EXT/zeromq/4.1.3
To build zeromq
./configure --prefix=$GLAST_EXT/zeromq/4.1.3 PKG_CONFIG_PATH=$GLAST_EXT/zeromq/4.1.3/lib/pkgconfig CPPFLAGS=-I$GLAST_EXT/zeromq/4.1.3/include LDFLAGS=-L$GLAST_EXT/zeromq/4.1.3/lib
make
make install
Then install pyzmq 14.7.0:
pip install pyzmq --install-option="--zmq=$GLAST_EXT/zeromq/4.0.4"
Jinga2: http://jinja.pocoo.org/docs/intro/#installation
pip install Jinja2
2.7.6-gl1
redhat6-x86_64bit-gcc44
- Obtain python source from python.org
- Ungzip/Untar source
- Change directory to Python-2.7.6
edit setup.py, in detect_modules() change the lines from:
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')to:
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
add_dir_to_list(self.compiler.library_dirs, '/usr/lib')
add_dir_to_list(self.compiler.include_dirs, '/usr/include')- Execute ./configure --prefix /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat5-i386-32bit-gcc41/python/2.7.6
- Execute make
- Execute make install
- Leave and erase the current directory (Python-2.7.6)
pip (also installs setuptools)
- curl -O https://bootstrap.pypa.io/get-pip.py
- python get-pip.py
...
unit test framework necessary for running numpy and scipy unit tests
- pip install nose
numpy 1.8.1
Still installing by hand to include --fcompiler flag to force correct fortran compiler to be used. This is dictated by whatever blas and lapack are linked against. For more information, see the numpy INSTALL.txt file.
...
which also installed tornado, python-dateutil, pyparsing, six, and backport.ssl-match-hostname
pywcs-1.12
pip install pywcs
astropy-0.3.1
pip install astropy
APLpy-0.9.11 (requires astropy)
pip install APLpy
4Suite XML - 1.0.2
The 4Suite-XML web site no longer works via easy_install. Installing by hand
python setup.py install
SciPy - 0.14.0
Continuing to install by hand to provide compiler flag to force correct fortran compiler, depending on what blas and lapack are linked against (try ldd /usr/lib/libblas.so). See SciPy's INSTALL.txt file for more information.
Download scipy-0.14.1.tar.gz from http://www.scipy.org/
Extract scipy-0.14.0.tar.gz
Change directory to scipy-0.14.0
Execute python setup.py config_fc --fcompiler=gnu95 install
Leave and erase scipy-0.14.0
Test by starting up python and doing:
import scipy
scipy.test() (NOTE this segfaulted on rhel5-32.. hoping that's not a big deal)
pywcsgrid2-0.1b2
Download from https://github.com/leejjoon/pywcsgrid2/downloads
Extract
cd
python setup.py install
PyYAML 3.11
curl -O http://pyyaml.org/download/pyyaml/PyYAML-3.11.tar.gz
...
How to use: http://docs.python-guide.org/en/latest/dev/virtualenvs/
Pmw 1.3.3
Home page: http://pmw.sourceforge.net/
...
- Obtain python source from python.org
- Ungzip/Untar source
- Change directory to Python-2.7.6
edit setup.py, in detect_modules() change the lines from:
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')to:
add_dir_to_list(self.compiler.include_dirs, '/usr/local/include')
add_dir_to_list(self.compiler.library_dirs, '/usr/local/lib')
add_dir_to_list(self.compiler.library_dirs, '/usr/lib')
add_dir_to_list(self.compiler.include_dirs, '/usr/include')- Execute ./configure --prefix /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat5-i386-32bit-gcc41/python/2.7.6
- Execute make
- Execute make install
- Leave and erase the current directory (Python-2.7.6)
pip (also installs setuptools)
- curl -O https://bootstrap.pypa.io/get-pip.py
- python get-pip.py
...
unit test framework necessary for running numpy and scipy unit tests
- pip install nose
numpy 1.8.1
Still installing by hand to include --fcompiler flag to force correct fortran compiler to be used. This is dictated by whatever blas and lapack are linked against. For more information, see the numpy INSTALL.txt file.
...
which also installed tornado, python-dateutil, pyparsing, six, and backport.ssl-match-hostname
pywcs-1.12
pip install pywcs
astropy-0.3.1
pip install astropy
APLpy-0.9.11 (requires astropy)
pip install APLpy
4Suite XML - 1.0.2
The 4Suite-XML web site no longer works via easy_install. Installing by hand
python setup.py install
SciPy - 0.14.0
Continuing to install by hand to provide compiler flag to force correct fortran compiler, depending on what blas and lapack are linked against (try ldd /usr/lib/libblas.so). See SciPy's INSTALL.txt file for more information.
Download scipy-0.14.1.tar.gz from http://www.scipy.org/
Extract scipy-0.14.0.tar.gz
Change directory to scipy-0.14.0
Execute python setup.py config_fc --fcompiler=gnu95 install
Leave and erase scipy-0.14.0
Test by starting up python and doing:
import scipy
scipy.test() (NOTE this segfaulted on rhel5-32.. hoping that's not a big deal)
pywcsgrid2-0.1b2
Download from https://github.com/leejjoon/pywcsgrid2/downloads
Extract
cd
python setup.py install
PyYAML 3.11
curl -O http://pyyaml.org/download/pyyaml/PyYAML-3.11.tar.gz
...
APLpy-0.9.8
pip install APLpy
4Suite XML - 1.0.2
The 4Suite-XML web site no longer works via easy_install. Installing by hand
python setup.py install
...
APLpy-0.9.8
pip install APLpy
4Suite XML - 1.0.2
The 4Suite-XML web site no longer works via easy_install. Installing by hand
python setup.py install
...
APLpy-0.9.8
pip install APLpy
4Suite XML - 1.0.2
The 4Suite-XML web site no longer works via easy_install. Installing by hand
python setup.py install
...
APLpy-0.9.5
- pip install APLpy
4Suite XML - 1.0.2
This module was not recognized by pip. Using easy_install instead.
...
- Download pyfits-1.3.tar.gz from http://www.stsci.edu/resources/software_hardware/pyfits/pyfits-1.3.tar.gz and save to /afs/slac/g/glast/ground/GLAST_EXT/tiger-i386-32bit/python/ if it doesn't already exist.
- Change directory to /afs/slac/g/glast/ground/GLAST_EXT/tiger-i386-32bit/python
- Extract pyfits-1.3.tar.gz
- Change directory to pyfits-1.3
- Execute /afs/slac/g/glast/ground/GLAST_EXT/tiger-i386-32bit/python/2.5.1-gl3/gcc40/bin/python setup.py install
- Leave and erase pyfits-1.3
4Suite XML - 1.0.2
- Download 4Suite-XML-1.0.2.tar.gz from http://downloads.sourceforge.net/sourceforge/foursuite/4Suite-XML-1.0.2.tar.gz?use_mirror=voxel and save to /afs/slac/g/glast/ground/GLAST_EXT/tiger-i386-32bit/python/ if it doesn't already exist.
- Change directory to /afs/slac/g/glast/ground/GLAST_EXT/tiger-i386-32bit/python
- Extract 4Suite-XML-1.0.2.tar.gz
- Change directory to 4Suite-XML-1.0.2
- Execute /afs/slac/g/glast/ground/GLAST_EXT/tiger-i386-32bit/python/2.5.1-gl3/gcc40/bin/python setup.py install --prefix /afs/slac/g/glast/ground/GLAST_EXT/tiger-i386-32bit/python/2.5.1-gl3/gcc40
- Leave and erase 4Suite-XML-1.0.2
...
- Download pyfits-2.1.1.tar.gz from http://www.stsci.edu/resources/software_hardware/pyfits/pyfits-2.1.1.tar.gz and save to /afs/slac/g/glast/ground/GLAST_EXT/tiger-i386-32bit-gcc40/python/ if it doesn't already exist.
- Change directory to /afs/slac/g/glast/ground/GLAST_EXT/tiger-i386-32bit-gcc40/python
- Extract pyfits-2.1.1.tar.gz
- Change directory to pyfits-2.1.1
- Execute /afs/slac/g/glast/ground/GLAST_EXT/tiger-i386-32bit-gcc40/python/2.5.1-gl4/gcc40/bin/python setup.py install
- Leave and erase pyfits-2.1.1
4Suite XML - 1.0.2
- Download 4Suite-XML-1.0.2.tar.gz from http://downloads.sourceforge.net/sourceforge/foursuite/4Suite-XML-1.0.2.tar.gz?use_mirror=voxel and save to /afs/slac/g/glast/ground/GLAST_EXT/tiger-i386-32bit-gcc40/python/ if it doesn't already exist.
- Change directory to /afs/slac/g/glast/ground/GLAST_EXT/tiger-i386-32bit-gcc40/python
- Extract 4Suite-XML-1.0.2.tar.gz
- Change directory to 4Suite-XML-1.0.2
- Execute /afs/slac/g/glast/ground/GLAST_EXT/tiger-i386-32bit-gcc40/python/2.5.1-gl4/gcc40/bin/python setup.py install --prefix /afs/slac/g/glast/ground/GLAST_EXT/tiger-i386-32bit-gcc40/python/2.5.1-gl4/gcc40
- Leave and erase 4Suite-XML-1.0.2
...
- Change directory to /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat4-i686-32bit-gcc34/python
- Extract APLpy-0.9.4.tar.gz
- Change directory to APLpy-0.9.4
- Execute /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat4-i686-32bit-gcc34/python/2.5.1-gl5/gcc34/bin/python setup.py install
- Leave and erase APLpy-0.9.4
4Suite XML - 1.0.2
- Download 4Suite-XML-1.0.2.tar.gz from http://downloads.sourceforge.net/sourceforge/foursuite/4Suite-XML-1.0.2.tar.gz?use_mirror=voxel and save to /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat4-i686-32bit-gcc34/python if it doesn't already exist.
- Change directory to /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat4-i686-32bit-gcc34/pythonExtract 4Suite-XML-1.0.2.tar.gz
- Change directory to 4Suite-XML-1.0.2
- Execute /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat4-i686-32bit-gcc34/python/2.5.1-gl5/gcc34/bin/python setup.py install --prefix /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat4-i686-32bit-gcc34/python/2.5.1-gl5/gcc34
- Leave and erase 4Suite-XML-1.0.2
...
- Change directory to /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat4-i686-32bit-gcc34/python
- Extract APLpy-0.9.4.tar.gz
- Change directory to APLpy-0.9.4
- Execute /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat4-i686-32bit-gcc34/python/2.6.5/gcc34/bin/python setup.py install
- Leave and erase APLpy-0.9.4
4Suite XML - 1.0.2
- Download 4Suite-XML-1.0.2.tar.gz from http://downloads.sourceforge.net/sourceforge/foursuite/4Suite-XML-1.0.2.tar.gz?use_mirror=voxel and save to /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat4-i686-32bit-gcc34/python if it doesn't already exist.
- Change directory to /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat4-i686-32bit-gcc34/pythonExtract 4Suite-XML-1.0.2.tar.gz
- Change directory to 4Suite-XML-1.0.2
- Execute /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat4-i686-32bit-gcc34/python/2.6.5/gcc34/bin/python setup.py install --prefix /afs/slac.stanford.edu/g/glast/ground/GLAST_EXT/redhat4-i686-32bit-gcc34/python/2.6.5/gcc34
- Leave and erase 4Suite-XML-1.0.2
...