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status: Running Complete
last update: 01 Aug 201326 June 2014

This page is a record of the configuration and execution of the P300 reprocessing project, full reprocessing from DIGIs using Pass8 analysis code.

Info
titleNOTICE
A JIRA was created for these tasks in May 2014.  Look to this JIRA's comments for operational details that formerly were included on this page.
Pipeline tasks
  • P300-ROOT - This task reads DIGI and produces reprocessed RECON + GCR + MERIT + FILTEREDMERIT (photons) + ELECTRONMERIT
  • P300-FITS - This task  (once it has been created) will never happen – look for P301-FITS, which reads MERIT and produces FT1 (photons) + EXTENDEDFT1 + LS1 (merit-like FITS file for photons) + EXTENDEDLS1 + ELECTRONFITS file

...

  • 4/23/2013 - Begin setting up P300 task for Pass8 reprocessing.
  • 5/10/2013 - Initial version of task running.  See this page for infomation about the task creation, and this page for performance comparison with P202
  • 7/2/2013 - after weeks of testing, final GR, jobOpts, etc. come together and production tentatively starts.
    • Block 1 is defined with this run range: 239557414 through 392842073 (2008-08-04 15:43:37 through 2013-06-13 18:47:50 UTC)
    • Update task to use the P202 generation of FT2 files (adds columns LAMBDA, RA_SUN, DEC_SUN, as well as meaningful BTIs)
    • First 10 trial jobs launched. Too many ACD INFO messages 'Missed Poca for ID 602 at...' so modify jobOpts to disable.
    • xroot disk space at the start of Pass8 = 508 TB (just after commissioning of fermi-xrd11)
  • 7/29/2013 - a new GR is prepared (20-09-01) which fixes some problems in ACD tracking issues affecting ~32 runs so far (out of 5283). trickleStream disabled, wait for pending jobs to start, rollback other failed jobs, switch to new GR, rollback of ACD-failed jobs...
    • This new GR continues to seg fault, so revert back to GR 20-09-00 and restart trickleStream.
  • 7/31/2013 - A new GR (20-09-02) with patch for ACD tracking installed after stream 5970. At the time, there were 33 failed processClumps jobs. All rolled back.
    • Last stream with GR 20-09-00 = 5970, run 274118943
    • First stream with GR 20-09-02 = 5971, run 274124672
    • Full list of rolled back substreams is here
  • 10/15/2013 - Update job options to use the new "L1current" flavor of calibrations/alignment rather than "p7repro".  First stream with new configuration: 20804.
  • 11/14/2013 - Block 1 complete except for routine cleanup

  • 11/21/2013 - Block 1 complete
    Problems encountered include:
    ** pipeline_summary file corruption causing loss of email or of it being ignored, finally jobs terminate via reaper (Tony notified)
    ** large blocks of failures due to dataCatalog not returning desired FT2 files (Brian notified, fix possible by moving query to scriptlet)
    ** jobs running out the clock due to anomalously slow xroot behavior (Wilko/Andy notified)
    ** problems with individual batch machines (Renata notified, and I also have the authority to remove batch machines from production)
    Summary of events processed in Block 1 from dataCatalog:

    NameTypeFilesEventsSizeCreated (UTC)
    ELECTRONMERITGroup2692901.4 GB09-May-2013 22:22:19
    FILTEREDMERITGroup2692901.4 GB09-May-2013 22:22:17
    GCRGroup2692958,653,424,7081.0 TB09-May-2013 22:22:18
    MERITGroup2692958,653,424,70898.3 TB09-May-2013 22:22:18
    RECONGroup2692958,653,424,708816.1 TB09-May-2013 22:22:20
    RELATIONGroup2692958,653,424,7087.7 TB09-May-2013 22:22:20

  • 4/30/2014 - Refactor P300-ROOT task to move all dataCatalog queries from batch jobs into scriptlets. ; update GPLtools (segregate INput and OUTput files); update git repository; etc..  Create task version 1.1 starting with stream 26929 to improve web app performance. Create JIRA for this task.  Submit first 50 streams of 'block 2'

  • 5/6/2014 - After big Oracle upgrade, regenerate/redefine 'block 2' to contain all runs through April 2014.  This block contains 31838 runs, in increase of 4909 runs, starting with 392848044 and ending with 420590482.

Configuration

  • .  All future routine operational comments will be added tot he JIRA and not to this confluence page.

  • 6/8/2014 - Block 2 complete (see JIRA for operational notes)

    NameTypeFilesEventsSizeCreated (UTC)
    ELECTRONMERITGroup3183801.7 GB09-May-2013 22:22:19
    FILTEREDMERITGroup3183801.7 GB09-May-2013 22:22:17
    GCRGroup3183869,250,217,0171.2 TB09-May-2013 22:22:18
    MERITGroup3183869,250,217,017115.9 TB09-May-2013 22:22:18
    RECONGroup3183869,250,217,017961.1 TB09-May-2013 22:22:20
    RELATIONGroup3183869,250,217,0179.1 TB09-May-2013 22:22:20
  • 10/6/2014 - Setup Block 3, data after 30 April 2014 through 30 Sep 2014.  
    • Last run of Block 2 = 420590485  2014-04-30 22:41:22
    • First run of Block 3 = 420596442  2014-05-01 00:20:39
    • Last run of Block 3 = 433810379  2014-09-30 22:52:56
    • Number of additional runs added by Block 3 = 2316
    • Total number of P300 runs = 34154
    • # streams in P300-ROOT (v1.1) = 4909
    • Last stream in P300-ROOT (v1.1) = 31837
  • 10/21/2014 - Block 3 complete
NameTypeFilesEventsSizeCreated (UTC)
ELECTRONMERITGroup3415401.8 GB09-May-2013 22:22:19
FILTEREDMERITGroup3415401.8 GB09-May-2013 22:22:17
GCRGroup3415474,250,808,7801.3 TB09-May-2013 22:22:18
MERITGroup3415474,250,808,780124.3 TB09-May-2013 22:22:18
RECONGroup3415474,250,808,7801.0 PB09-May-2013 22:22:20
RELATIONGroup3415474,250,808,7809.7 TB09-May-2013 22:22:20

 

  • 2/2/2015 - Setup Block 4, data from 1 Oct 2014 through 31 Jan 2015
    • Last run Block 3 = 433810379  2014-09-30 22:52:56
    • First run Block 4 = 433816093  2014-10-01 00:28:10
    • Last run Block 4 = 444436565  2015-01-31 22:36:02
    • Total number of P300-ROOT runs = 36020
    • Number of additional runs added by block 4 = 1866
  • 2/17/2015 - Block 4 complete (after a week of disasters).  Summary from dataCatalog:
NameFilesEventsSizeCreated (UTC)
GCR3602078,204,860,1861.4 TB09-May-2013 22:22:18
MERIT3602078,204,860,186130.8 TB09-May-2013 22:22:18
RECON3602078,204,860,1861.1 PB09-May-2013 22:22:20
RELATION3602078,204,860,18610.2 TB09-May-2013 22:22:20

 

  • 4/8/2015 - Setup Block 5, data from 1 Feb 2015 through 7 Apr 2015 penultimatebackfill
    • Last run Block 4 = 444436565  2015-01-31 22:36:02
    • First run Block 5 = 444442524  2015-02-01 00:15:21
    • Last run Block 5 = 450142738  2015-04-07 23:38:55
    • Total number of P300-ROOT runs = 37023
    • Number of additional runs in block 5 = 1003

  • 4/16/2015 - Block 5 complete.  Summary from dataCatalog:
     

    NameFilesEventsSizeCreated (UTC)
    GCR3702380,323,456,0121.4 TB09-May-2013 22:22:18
    MERIT3702380,323,456,012134.4 TB09-May-2013 22:22:18
    RECON3702380,323,456,0121.1 PB09-May-2013 22:22:20
    RELATION3702380,323,456,01210.5 TB09-May-2013 22:22:20
  • 6/4/2015 - Setup and start Block 6, through 6/3/2015

    • Last run of Block 5: 450142738 (2015-04-07 23:38:55)
      First run of Block 6: 450148449 (2015-04-08 01:14:06)
      Last run of Block 6: 455062807 (2015-06-03 22:20:04)

      Total runs in combined runList = 37888 (formerly 37023)
      Total new runs in Block 6 = 865

  • 6/10/2015 - Block 6 complete.  Summary from dataCatalog:

    NameFilesEventsSizeCreated (UTC)
    GCR3788882,148,825,6061.4 TB09-May-2013 22:22:18
    RELATION3788882,148,825,60610.8 TB09-May-2013 22:22:20
    MERIT3788882,148,825,606137.4 TB09-May-2013 22:22:18
    RECON3788882,148,825,6061.1 PB09-May-2013 22:22:20
  • 6/24/2015 - Setup and start Block 7, the final block of P300 reprocessing:
    • Last run of Block 6: 455062807 (2015-06-03 22:20:04)
    • First run of Block 7: 455069221 (2015-06-04 00:06:58)
    • Last run of Block 7: 456829490 (2015-06-24 09:04:47)
    • First run of Level 1: 456835199 (2015-06-24 10:39:56)
      Total runs in full reprocessing task =  38198
      Total new runs in Block 7 = 310

  • 6/26/2015 - Block 7 – and entire task – COMPLETE

    NameFilesEventsSizeCreated (UTC)
    GCR3819882,812,280,3091.5 TB09-May-2013 22:22:18
    MERIT3819882,812,280,309138.5 TB09-May-2013 22:22:18
    RECON3819882,812,280,3091.1 PB09-May-2013 22:22:20
    RELATION3819882,812,280,30910.8 TB09-May-2013 22:22:20


  • 8/2/2015 Emergency reprocess of 40 runs that were Level 1 processed with bad CAL calibrations

    Former (block7) run consisted of 38198 runs.
    New (block8) run consists of 38238 runs.
    There are 40 new runs to reprocess.
    First new run 459716687
    Last new run 459941302
    Starting point of pipeline task P300-ROOT (v1.1): 11269

Configuration

/nfs/farm/g/glast/u38/Reprocess-tasks/P300-ROOT

Task Location

/nfs/farm/g/glast/u38/Reprocess-tasks/P300-ROOT

Task Version1.0 (streams 0-26928), 1.1 (streams 26929-end)

Task Location

Task Status

http://glast-ground.slac.stanford.edu/Pipeline-II/index.jsp

GlastRelease

20-09-00 streams 0 - 5970 (02 Jul 2013)
20-09-02 streams 5971 - end (31 Jul 2013)

Run Selection

based on a modified "standard" selection, see https://confluence.slac.stanford.edu/display/SCIGRPS/Official+LAT+Datasets
(((sIntent=="nomSciOps" || sIntent=="nomSO_noSk_noCno_optGccc_allEna" || sIntent=="nomSciOps_diagEna" || (sIntent=="nomSciOps_Emin5MeV"&&RunMin>242070455) || nRun==242429468 ) && (RunQuality != "Bad" || is_null ( RunQuality ) ) ) || sIntent=="nadirOps" )

s/c data

P202 FT2SECONDS which will eventually become a "standard" Public Release https://confluence.slac.stanford.edu/display/SCIGRPS/Official+LAT+Datasets

Input Run List

ftp://ftp-glast.slac.stanford.edu/glast.u38/Reprocess-tasks/P300-ROOT/config/runList.txt

photonFilter

Not yet applicable, although this is defined by default:  CTBParticleType==1 && ((FT1EventClass & 0x00003EFF)!=0)
pass7.6_Extended_cuts_L1 in evtClassDefs

NOTE: task P301-MERIT regenerates MERIT files from P300 MERIT files using TMineExt, updating the event classification data

electronFilter

Not yet applicable, although this is defined by default:  CTBParticleType==1

Code Variants

redhat5-i686-32bit-gcc41 (Optimized), note that rhel5-64 and rhel6-64 GR builds are not yet available

jobOpts

ftp://ftp-glast.slac.stanford.edu/glast.u38/Reprocess-tasks/P300-ROOT/config/Pass8Recon.txt

calibrations & alignments

"p7repro" and "L1current" (the latter to conform with new Level 1 flavor, and to include new ACD calibration for 9 Sep 2012)

Output Data Products

RECON, GCR, RELATION, MERIT, FILTEREDMERIT, ELECTRONMERIT (but note that FILTEREDMERIT and ELECTRONMERIT are empty or contain junk)

...

  • Current performance results for the Pass8 code are on this page .

  • For 20,000 event clumps:

    job step

    average CPU time

    processClump

    183 min

    mergeClumps

    10 min

  • Plot of job throughput as of 20130813

    From the plot, one can see a processing rate of ~208 runs/day. Assuming 28500 total runs, this would mean a repro time of 137 days or 4.5 months.
  • Another plot showing the number of run scratch directories cleaned up per day:
  • Timing plots for first part of task version 1.1
    Image Added

P300x-FITS
Anchor
P300-FITS
P300-FITS

...

  • 8/1/2013 - Initial P300x-FITS task created. 10 trial runs processed. (See caveats above.)

  • 8/7/2013 - First year of data run through the task, amounting to 5537 runs and 11790391606 events:

    First run

    239557417

    2008-08-04 15:43:37

    Last run

    271850279

    2009-08-13 09:57:59

  • 8/28/2013 - Second year of data ready and processed -> extendedFT1. Note that 36 troublesome runs omitted from 1st year data were included in this sample. There should be no missing runs in this sample.

    First run

    239557417

    2008-04-2008 15:43:37

    Last run

    302647722

    2010-08-04 20:48:40

    10,976 runs, 2,677,747,829 events, 234.7 GB

  • 9/25/2013 - Third year of data ready.

    First run

    239557417

    2008-04-2008 15:43:37

    Last run

    334184989

    2011-08-04 21:09:47

    This block contains 16,516 runs and 36,056,385,847 events, or an increase over year 2 of 5,540 runs.

  • 11/21/2013 - Prepare for final Block 1 backfill.  First run of backfill: 334190716, last run of backfill: 392842073, a total of 10 413 additional runs to process.

  • 11/22/2013 - Block 1 is complete.  The P300x area of the dataCatalog reports:

    NameTypeFilesEventsSizeCreated (UTC)Links
    EXTENDEDFT1Group269297,149,992,671626.6 GB01-Aug-2013 17:29:46Files


  • THIS TASK IS DEFUNCT, replaced by P301-MERIT and P301-FITS

Configuration

CAUTION: The following data describes the experimental P300x-FITS task, not the production task

...

12/17/2013 begin processing