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# modulefiles relies on an ENV MODULEPATH $ export MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles:/afs/slac/package/singularity/modulefiles:/opt/modulefiles # list available modulesfiles $ module avail ------------------------------------------ /afs/slac/package/singularity/modulefiles ------------------------------------------ amira/6.7.0 eman2/20190418 motioncor2/1.2.2 relion/3.0 slac-ml/20181002.0 cdms-jupyterlab/1.6 eman2/20190603 motioncor2/1.2.3-intpix relion/3.0.2 slac-ml/20190606.1 chimera/1.13.1 emClarity/1.0.0 phenix/1.14-3260 relion/3.0.4 slac-ml-devel/20181002.0 ctffind/4.1.10 git/2.13.0 protomo/2.4.2 relion/3.0_beta-20181121 xds/20190315 ctffind/4.1.13 icon-gpu/1.2.9 pymol/2.1.1 resmap/1.95 eman2/20181015 imod/4.9.10 pymol/2.2 rosetta/2018.48 eman2/20190320 imod/4.9.11 rclone/1.44 rosetta/3.10 eman2/20190324 motioncor2/1.2.1 relion/2.1 scipion/1.2.1 ------------------------------------------------------ /opt/modulefiles ------------------------------------------------------- boost/1.69.0-openmpi-3.1.2-gcc-4.8.5 lsf boost/1.69.0-openmpi-3.1.2-gcc-7.3.1 openmpi/3.1.2-gcc-4.8.5 cuda/10.0(default) openmpi/3.1.2-gcc-7.3.1 cuda/9.0 openmpi/3.1.3-gcc-4.8.5 cuda/9.2 openmpi/3.1.3-gcc-7.3.1 fftw3/3.3.8-openmpi-3.1.2-gcc-4.8.5 parallel-hdf5/1.10.4-openmpi-3.1.2-gcc-4.8.5 fftw3/3.3.8-openmpi-3.1.2-gcc-7.3.1 parallel-hdf5/1.10.4-openmpi-3.1.2-gcc-7.3.1 gcc/4.8.5 parallel-hdf5/1.10.4-openmpi-3.1.3-gcc-4.8.5 gcc/6.3.1 parallel-hdf5/1.10.4-openmpi-3.1.3-gcc-7.3.1 gcc/7.3.1(default) PrgEnv-gcc/4.8.5(default) intel/2019.4.227(default) PrgEnv-gcc/7.3.1 intelmpi/2019.4.227(default) python/anaconda3(default)slac-ml/20190606.1 ... |
There is a specific module called slac-ml that provides a prebaked Singularity image derived from the jupyterhub image.
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