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import sys
sys.path.append("/reg/neh/home/sikorski/scripts/correlator")
import xcs_correlator as xcs_corr
######################
path = r"/reg/neh/home1/sikorski/xcs_pyana_current/e167-r0011-s00-c00/2013-08-23-11-30-43-581071/
path_mask = r"/reg/neh/home/sikorski/scripts"
fina_mask = r"test.mat.npz"
ts_fina = r"e167-r0011-s00-c00_time_stamps.txt"
monitor_number = -1
treshold_low = -0.002
treshold_high = 0.1E9
LLD = 20
tau = [1,2,3,4,5,6,7,8,9,10,12,14,16,20]
######################             | Define parameters in xcs_correlator.py
c = xcs_corr.img_correlator(path)  | self.path = path; self.notzero = 1; self.results = {};
c.set_time_stamps_fina(ts_fina)    ->| self.time_stamps_fina = "e167-r0011-s00-c00_time_stamps.txt"
c.initialize_correlator()        ->  | defines many self.*
c.set_monitor(monitor_number)      ->| self.monitor_name = 'no normaloization'; self.monitor = np.ones_like(monitor[:,0]) = all 1
c.set_time_stamps_fina(ts_fina)    | !!! repetition...
c.set_LLD(LLD)                   ->  | self.LLD = 20
c.set_tau(tau)                    -> | self.tau = [1,2,3,4,5,6,7,8,9,10,12,14,16,20]
c.set_mask_folder(path_mask)      -> | self.mask_folder = "/reg/neh/home/sikorski/scripts"
c.set_mask_file(fina_mask)       ->  | self.mask_fina = "test.mat.npz"
c.set_mask()                       | loads a few files in dictionary self.mask = {}
c.set_treshold(treshold_low)     ->  | self.treshold =  -0.002 (def=0)
c.set_treshold_up(treshold_high) ->  | self.treshold_up =0.1E9 (def=1E4)
c.submit_correlator_jobs()         -| calculates correlators
c.avg_g2()
c.harvest_SAXS_data()
c.plot_g2()
c.plot_fit_results(777)
c.plot_SAXS()
plt.show()