Page History
...
Command to run interactively on psana#### or submit in batch from pslogin## node:
| Code Block |
|---|
psana -c <config-file> <xtc-file-list> bsub -q psfehq -o log-file 'psana -c <config-file> <xtc-file-list>' |
For example:
| Code Block |
|---|
psana -c ImgAlgos/data/psana-xcsi0112-r0015-img-auto-correlation.cfg /reg/d/psdm/XCS/xcsi0112/xtc/e167-r0015-* |
where ImgAlgos/data/psana-xcsi0112-r0015-img-auto-correlation.cfg is an example of the configuration script for psana and /reg/d/psdm/XCS/xcsi0112/xtc/e167-r0015-* are the input xtc files for particular run.
| Note |
|---|
A couple of limitations due to LCLS policy: |
Produce files:
| Code Block |
|---|
img-xcs-r0015-b0000.bin - file with a part of image vs time img-xcs-r0015-b0001.bin img-xcs-r0015-b0002.bin img-xcs-r0015-b0003.bin img-xcs-r0015-b0004.bin img-xcs-r0015-b0005.bin img-xcs-r0015-b0006.bin img-xcs-r0015-b0007.bin img-xcs-r0015-time.txt - list of time-records for all events in processed run. img-xcs-r0015-time-ind.txt - list of time-records for all events in processed run with time index. img-xcs-r0015-med.txt - file with metadata. In particular it has the original image size, number of image parts for splitting, number of images in run, etc. |
...
Command to run interactively on psana#### or submit in batch from pslogin## node:
| Code Block |
|---|
corana -f <fname-data> [-t <fname-tau>] [-h] [-l <logfile>] [-b <basedir>] |
For example the interactive and batch mode commands:
bsub -q psfehq -o log-file 'corana -f <fname-data> [-t <fname-tau>] [-h] [-l <logfile>] [-b <basedir>]'
|
For example the interactive and batch mode commands:
| Code Block |
|---|
|
| Code Block |
corana -f img-xcs-r0015-b0001.bin -t my-tau.txt bsub -q psnehq -o ~/<path-from-home-dir>/log.txt 'corana -f img-xcs-r0015-b0001.bin -t my-tau.txt bsub -q psfehq -o log-file 'corana -f img-xcs-r0015-b0000.bin' |
Where ~/<path-from-home-dir>/ is an arbitrary directory, but this directory should exist before running this script.
...
ImgAlgos/app/corana_merge application
Command :to run interactively on psana#### or submit in batch from pslogin## node:
| Code Block |
|---|
corana_merge -f <fname-data> [-t <fname-tau>] [-h] [-l <logfile>] [-b <basedir>]
bsub -q psfehq -o log-file ' |
| Code Block |
corana_merge -f <fname-data> [-t <fname-tau>] [-h] [-l <logfile>] [-b <basedir>]' |
For example:
| Code Block |
|---|
corana_merge -f img-xcs-r0015-b0001-result.bin -t my-tau.txt |
Produce This procedure produces file:
| Code Block |
|---|
img-xcs-r0015-image-result.bin |
...
ImgAlgos/app/corana_submit - this script allows to run all of above procedures by a single command from pslogin## node and it keeps eye on processing of jobs in batch and doing the file managment. Command to start:
| Code Block |
|---|
corana_submit [-c <config-file>] [-t <fname-tau>] [-x] <xtc-file-list> |
...
File name tail | Format | Content |
|---|---|---|
*-image-result.bin | binary for <float32_t t> | correlators for all image pixels for all tau values |
*-time-ind.txt | text | time records for all selected events/images |
*-tau.txt | text | the list of tau intervals |
*-med.txt | text | meta data parameters |
*-hist.txt | text | Histogram array with correlators averaged for ring regions of the image for all |
Overview
Content Tools