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Here is the directory structure I use if you are looking for ideas on how to get going with eclipse:

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titleIDE Project Files don't belong in CVS

Since Maven can automatically generate IDE project files for all of our IDE's (eclipse, JBuilder, Netbeans, etc.), you probably shouldn't store IDE project files in CVS. Instead, when you check out a project for the first time just run maven eclipse (or whatever the plg-in name is for your IDE).