To access cryoSPARC on SDF, please follow the instructions below:
1. Go to https://sdf
SLAC can provide a hosted instance of cryosparc that can make use of the slurm cluster that we have onsite.
You will need to make one small change due to our AFS file system before you will be able to submit jobs tho:
...
...
cd ~${USER}/.cache
rm -rf pycuda
mkdir /gpfs/slac/cryo/fs1/u/${USER}/.cache/pycuda
ln -sf /gpfs/slac/cryo/fs1/u/${USER}/.cache/pycuda ~/.cache/pycuda
...
/public/doc/#/. Log in with your SLAC windows account.
2. You will see options on the top of the page. Click “Interactive Apps” followed by “cryoSPARC Desktop”.
3. Fill in the resources you need then click launch. (You will have to obtain your own cryoSPARC license on cryoSPARC website. They should have very detailed documentation as how you get one.)
4. After you are allocated the computing resources, click “Launch cryoSPARC desktop” then you will get a TurboVNC page where you have a linux desktop.
5. In the Firefox browser, go to localhost:39000 to get a cryoSPARC interface. If you don’t see it, try 39100 or 39200.
6. Log in with your slac email and the password is your license. You should be able to start using cryoSPARC.