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export JAVA_OPTS="-DdisableSvtAlignmentConstants=trueDorg.hps.conditions.enableSvtAlignmentConstants" |
The full list of Java system properties to be used should be included in this variable. You should not set the options -Xmx or -Djava.util.logging.config.class, as these are set by each script.
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java -DsomeVar=valueDorg.hps.conditions.enableSvtAlignmentConstants [...] |
When set in this way, these values are accessible to the framework as Java system properties.
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