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Comment: Migration of unmigrated content due to installation of a new plugin

Pedestals

psana -c ana-cxii0212/psana-cxii0212-r0104-pedestals.cfg

where ana-cxii0212/psana-cxii0212-r0104-pedestals.cfg

Code Block

[psana]
files   = /reg/d/psdm/cxi/cxii0212/xtc/e165-r0104-s00-c00.xtc \
          /reg/d/psdm/cxi/cxii0212/xtc/e165-r0104-s02-c00.xtc

events      = 1000
modules = ImgAlgos.CSPadArrAverage

[ImgAlgos.CSPadArrAverage]
source        = DetInfo(CxiDs1.0:Cspad.0)
key           = 
avefile       = ana-cxii0212/cspad-cxii0212-r0104-pedestals-ave.dat
rmsfile       = ana-cxii0212/cspad-cxii0212-r0104-pedestals-rms.dat
print_bits    =  15
evts_stage1   = 100
evts_stage2   = 100
gate_width1   = 200
gate_width2   =  20

./PlotCSPadArrayFromFile.py ana-cxii0212/cspad-cxii0212-r0104-pedestals-ave.dat 800 1400

Image AddedImage AddedImage Added

Copy the pedestal file:
bq: cp ana-cxii0212/cspad-cxii0212-r0104-pedestals-ave.dat ana-cxii0212/calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/pedestals/0-end.data

Background

Averaged background for 1000 events is obtained from:

...

./PlotCSPadArrayFromFile.py ana-cxii0212/cspad-cxii0212-r0091-mask-bkgd.dat -1 2

...

Noisy-pixel mask

From peak finder output

./PlotCSPadArrayFromFile.py ana-cxii0212/cspad-cxii0212-r0091-noise-mask-out.dat -1 2

Image Added Image Added

Peak finder / selector

psana -c ana-cxii0212/psana-cxii0212-r0091-peak-finder.cfg

...

Code Block
[psana]
files   = \
  /reg/d/psdm/cxi/cxii0212/xtc/e165-r0091-s00-c00.xtc \
  /reg/d/psdm/cxi/cxii0212/xtc/e165-r0091-s00-c01.xtc \
  /reg/d/psdm/cxi/cxii0212/xtc/e165-r0091-s02-c00.xtc \
  /reg/d/psdm/cxi/cxii0212/xtc/e165-r0091-s02-c01.xtc

#skip-events = 100
#events      =  1000
experiment  = cxii0212
calib-dir   = ana-cxii0212/calib


modules = cspad_mod.CsPadCalib \
          ImgAlgos.CSPadMaskApply \
          ImgAlgos.CSPadArrPeakFinder \
          PSXtcOutput.XtcOutputModule  

[cspad_mod.CsPadCalib]
inputKey      = 
outputKey     = calibrated
doPedestals   = yes
doPixelStatus = no
doCommonMode  = yes


[ImgAlgos.CSPadMaskApply]
source            = DetInfo(CxiDs1.0:Cspad.0)
inkey             = calibrated
outkey            = masked_arr
mask_fname        = ana-cxii0212/cspad-cxii0212-r0091-mask-badregs.dat
masked_amp        = -1 0
print_bits        =  5
mask_control_bits = 15

[ImgAlgos.CSPadArrPeakFinder]
source            = DetInfo(CxiDs1.0:Cspad.0)
key               = masked_arr
key_peaks_out     = peaks

hot_pix_mask_inp_file = ana-cxii0212/cspad-cxii0212-r0091-noise-mask-ini.dat
hot_pix_mask_out_file = ana-cxii0212/cspad-cxii0212-r0091-noise-mask-out.dat
frac_noisy_evts_file  = ana-cxii0212/cspad-cxii0212-r0091-noise-frac.dat

evt_file_out        = tmp/cspad-ev-
rmin                =     48
dr                  =     1
SoNThr_noise        =     3
SoNThr_signal       =     4
frac_noisy_imgs     =   0.9
peak_npix_min       =     45
peak_npix_max       =   500
peak_amp_tot_thr    =     0.
peak_SoN_thr        =     5.
event_npeak_min     =     34
event_npeak_max     =  1000
event_amp_tot_thr   =     0.
nevents_mask_update =     0
nevents_mask_accum  =    50
selection_mode      = SELECTION_ON
out_file_bits       =    15
print_bits          =  1601

[PSXtcOutput.XtcOutputModule]
dirName       = ./xtc

SummaryIntermediate:

Code Block
[info:ImgAlgos.CSPadArrPeakFinder]   NFrames:   20808 1000  NHits:       517 (  0.25%70%)  Time:    3783220.226357 sec ( 54.500538 fps)
[info:TimeInterval::stopTime] Time to process 20808 events is 3783.23 sec, or 0.181816 sec/event

Selected events:

ImgAlgos.CSPadArrPeakFinder]   NFrames:    2000  NHits:      15 (  0.75%)  Time:    436.159 sec ( 4.585 fps)
[info:ImgAlgos.CSPadArrPeakFinder]   NFrames:    3000  NHits:      25 (  0.83%)  Time:    651.769 sec ( 4.603 fps)
[info:ImgAlgos.CSPadArrPeakFinder]   NFrames:    4000  NHits:      33 (  0.82%)  Time:    872.068 sec ( 4.587 fps)
[info:ImgAlgos.CSPadArrPeakFinder]   NFrames:    5000  NHits:      38 (  0.76%)  Time:   1087.951 sec ( 4.596 fps)

Selected events:

Code Block
Code Block

tmp/cspad-ev-000306-r0091-2012-05-15-001110.941625287-peaks.txt
tmp/cspad-ev-000553-r0091-2012-05-15-001135.646752814-peaks.txt
tmp/cspad-ev-000823-r0091-2012-05-15-001202.650968368-peaks.txt
tmp/cspad-ev-000930-r0091-2012-05-15-001213.354293959-peaks.txt
tmp/cspad-ev-001047-r0091-2012-05-15-001225.058570990-peaks.txt
tmp/cspad-ev-001418-r0091-2012-05-15-001302.172902215-peaks.txt
tmp/cspad-ev-001509-r0091-2012-05-15-001311.276967953-peaks.txt
tmp/cspad-ev-001575000049-r0091-2012-05-15-001317001045.879585151234643687-peaks.txt
tmp/cspad-ev-002286000257-r0091-2012-05-15-001429001106.008349593040495738-peaks.txt
tmp/cspad-ev-003655000290-r0091-2012-05-15-001645001109.931535488341278610-peaks.txt
tmp/cspad-ev-003960000405-r0091-2012-05-15-001716001120.436622269843585383-peaks.txt
tmp/cspad-ev-004211000553-r0091-2012-05-15-001741001135.541492733646752814-peaks.txt
tmp/cspad-ev-004430000757-r0091-2012-05-15-001803001156.446489292050227355-peaks.txt
tmp/cspad-ev-004553000823-r0091-2012-05-15-001815001202.751236420650968368-peaks.txt
tmp/cspad-ev-004632001047-r0091-2012-05-15-001823001225.655158305058570990-peaks.txt
tmp/cspad-ev-004716001378-r0091-2012-05-15-001832001258.059028739171085846-peaks.txt
tmp/cspad-ev-005157001393-r0091-2012-05-15-001916001259.170239065671736030-peaks.txt
tmp/cspad-ev-005175001509-r0091-2012-05-15-001917001311.970253957276967953-peaks.txt
tmp/cspad-ev-005439001678-r0091-2012-05-15-001944001328.371234637182259445-peaks.txt
tmp/cspad-ev-005993001914-r0091-2012-05-15-002039001351.782288895792593865-peaks.txt
tmp/cspad-ev-006135001969-r0091-2012-05-15-002053001357.983075762295585954-peaks.txt
tmp/cspad-ev-006371001991-r0091-2012-05-15-002117001359.585955573496636193-peaks.txt
tmp/cspad-ev-006500002185-r0091-2012-05-15-002130001418.487718090904297816-peaks.txt
tmp/cspad-ev-007162002214-r0091-2012-05-15-002236001421.691310584805401099-peaks.txt
tmp/cspad-ev-007391002286-r0091-2012-05-15-002259001429.591911945008349593-peaks.txt
tmp/cspad-ev-008005002361-r0091-2012-05-15-002400001436.999914990511386761-peaks.txt
tmp/cspad-ev-009016002564-r0091-2012-05-15-002542001456.118978291817729702-peaks.txt
tmp/cspad-ev-009369002608-r0091-2012-05-15-002617001501.427152390218988796-peaks.txt
tmp/cspad-ev-009609002751-r0091-2012-05-15-002641001515.436266699523954494-peaks.txt
tmp/cspad-ev-009947002896-r0091-2012-05-15-002715001530.245061266028242293-peaks.txt
tmp/cspad-ev-010340002927-r0091-2012-05-15-002754001533.545533496129495321-peaks.txt
tmp/cspad-ev-010864002985-r0091-2012-05-15-002846001538.944592637931948039-peaks.txt
tmp/cspad-ev-011354003003-r0091-2012-05-15-002935001540.944231879732602249-peaks.txt
tmp/cspad-ev-011973003598-r0091-2012-05-15-003037001640.838419852231630346-peaks.txt
tmp/cspad-ev-012442003603-r0091-2012-05-15-003124001640.744879854731596354-peaks.txt
tmp/cspad-ev-013186003609-r0091-2012-05-15-003239001641.162135169331563485-peaks.txt
tmp/cspad-ev-013633003692-r0091-2012-05-15-003323001649.893364840631654569-peaks.txt
tmp/cspad-ev-014558003713-r0091-2012-05-15-003456001651.420819224731763017-peaks.txt
tmp/cspad-ev-014637003774-r0091-2012-05-15-003504001657.320304670832338070-peaks.txt
tmp/cspad-ev-016357003870-r0091-2012-05-15-003756001707.320371180434251204-peaks.txt
tmp/cspad-ev-016787004087-r0091-2012-05-15-003839001729.310318768139940879-peaks.txt
tmp/cspad-ev-017064004211-r0091-2012-05-15-003907001741.007776135541492733-peaks.txt
tmp/cspad-ev-018088004325-r0091-2012-05-15-004049001752.424145753942562495-peaks.txt
tmp/cspad-ev-018322004338-r0091-2012-05-15-004112001754.826097523242951955-peaks.txt
tmp/cspad-ev-018352004768-r0091-2012-05-15-004115001837.826064756261195747-peaks.txt
tmp/cspad-ev-018360-r0091-2012-05-15-004116.626048661-peaks.txt
tmp/cspad-ev-018434-r0091-2012-05-15-004124.026129375-peaks.txt
tmp/cspad-ev-018501-r0091-2012-05-15-004130.726616425-peaks.txt
tmp/cspad-ev-018838-r0091-2012-05-15-004204.431468969-peaks.txt
tmp/cspad-ev-019839-r0091-2012-05-15-004344.830850260-peaks.txt
tmp/cspad-ev-020027-r0091-2012-05-15-004403.635232348-peaks.txt

Images 257, 485, 553, and 823:
Image AddedImage AddedImage AddedImage Added