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Cloning packages from git
git clone git@github.com:slac-lcls/lcls2.git
git clone git@github.com:lcls-psana/Detector.git
git clone git@github.com:lcls-psana/PSCalib.git
git clone git@github.com:lcls-psana/CalibManager.git
git clone git@github.com:lcls-psana/pyimgalgos.git
git clone git@github.com:lcls-psana/.git
git clonegit@github.com:lcls-psana/SConsTools.git
git clone git@github.com:lcls-psana/pdsdata.git
git clone git@github.com:lcls-psana/psalg.git
git clone git@github.com:lcls-psana/data_test.git /tmp/data_test
git clone git@github.com:slaclab/anarel-manage.git manage
git clone git@github.com:slac-lcls/psana1-feedstock.git
git clone https://github.com/slac-lcls/psana1-feedstock
PCDS
LCLS1
Development
cd mytestrel
rm .sit_conda_env
...
source /cds/sw/ds/ana/conda1/manage/bin/setup_testrel
LCLS2
Development
cd mytestrel
source /cds/sw/ds/ana/conda2/manage/bin/psconda.sh
...
source /reg/g/pcds/dist/pds/ued/scripts/setup_env.sh
Clone packages from git
git clone git@github.com:slac-lcls/lcls2.git
git clone git@github.com:lcls-psana/Detector.git
git clone git@github.com:lcls-psana/PSCalib.git
git clone git@github.com:lcls-psana/CalibManager.git
git clone git@github.com:lcls-psana/pyimgalgos.git
git clone git@github.com:lcls-psana/.git
Build ami2
ssh -Y psbuild-rhel7
...
source /sdf/group/lcls/ds/ana/sw/conda1/manage/bin/psconda.sh [ -py2]
source /sdf/group/lcls/ds/ana/sw/conda1/manage/bin/psconda.sh
source /sdf/group/lcls/ds/ana/sw/conda1/manage/bin/setup_testrel
...
It’s “ssh psffb”. add the “dir=“ option to DataSource, or “export SIT_PSDM_DATA=/cds/data/drpsrcf”
SLURM commands
sinfo -N -r -l
squeue -u $USER | grep 197 | awk '{print $1}' | xargs -n 1 scancel
squeue -u <username>
scancel <job_id>
scontrol show partition <partition>
scontrol show node <hostname>
scontrol show job <job_id>
scontrol hold <job_list>
scontrol release <job_list>
scontrol show hostnames
sinfo --states=idle
srun --partition milano --nodelist=sdfmilan112 --account lcls:prjdat21 -n 1 --time=02:00:00 --exclusive --pty /bin/bash
srun --partition milano --account lcls:prjdat21 -n 1 --time=02:00:00 --exclusive --pty /bin/bash
srun --partition milano --reservation=lcls:scaling --account lcls:prjdat21 -n 1 --time=02:00:00 --exclusive --pty /bin/bash
Patching release
on pcds
> s3dflogin
> pslogin
ssh psbuild-rhel7-01 -l psreldev
source /cds/sw/ds/ana/conda1/manage/bin/psconda.sh
on s3df
>s3dflogin
ssh psana -l psreldev
source /sdf/group/lcls/ds/ana/sw/conda1/manage/bin/psconda.sh
Patching
conda deactivate
conda env list
conda activate ana-4.0.51-py3
2023-09-15 O'Grady, Paul Christopher <cpo@slac.stanford.edu> To: Dubrovin, Mikhail
For the log the patch commands are below:
(ana-4.0.51-py3) pwd
/sdf/group/lcls/ds/ana/sw/conda1/inst/envs/ana-4.0.51-py3/lib/python3.9/site-packages/Detector
(ana-4.0.51-py3) cp ~cpo/git/Detector/src/AreaDetector.py AreaDetector.py
(ana-4.0.51-py3) cd ../PSCalib/
(ana-4.0.51-py3) cp ~cpo/git/PSCalib/src/GlobalUtils.py GlobalUtils.py
chris
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