This page contains information about using EPICS with MATLAB R2020a and Java in the LCLS Development and Production environments.

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Warning

Attention:

All scripts in this page are assuming that your current shell is Bash.

If you are using some other shell such as tcsh, you can switch to bash in your current session by typing "bash" in your terminal.
If you wish to switch permanently to Bash as your default shell here are some instructions:

In order to change your default shell at login from tcsh (or any other shell) to Bash, please execute the following command on a Linux server on the AFS network, such as a rhel6-64* node. (You will be prompted for your password during this process):

ypchsh -s /bin/bash

After that, close the terminal and open a new one. You will be using Bash as the default shell.

You can check if all went well with the following command in a new Terminal window:

echo $SHELL

matpva

matpva is a powerful extention that provides seamless integration between MATLAB and EPICS 7 through Python P4P module.

How to use matpva

matpva: Integrate EPICS7 into MATLAB using PVAccess for Python (P4P) module

How to test matpva

How to test matpva in DEV and PROD (lcls and facet)

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At the time of this writing, the latest version of Java available in Development and Production is 1.8.0_181 (64-bit). In order to use this Java version, source the following scripts depending on your environment:

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matlab_top
matlab_top
MATLAB

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matlab_installation
matlab_installation
Installation

For MATLAB admins (epicsmgr group members) only:

New versions (versions later than 2012a) of MATLAB should be installed in the 3rd-party software package area under the matlab folder:
- Development: Development
/afs/slac/g/lcls/physics/setup/javaSetup-R1.8.0_181.bashProduction
package/matlab
- Production: /usr/local/lcls/physics/setup/javaSetup-R1.8.0_181.bash

Note

For Oracle compatibility, the Oracle client used must also be compiled for 64-bit. In order to use the supported 64-bit Oracle client, source the following scripts depending on your environment:

Development
/afs/slac/g/lcls/tools/oracle/oracleSetup-R11.2.0.4.bash

Production
/usr/local/lcls/tools/oracle/oracleSetup-R11.2.0.4.bash

EPICS Java APIs

package/matlab
Inside the matlab directory, versions should be installed in folders that correspond to their MATLAB version, e.g. 2012a, 2019a, 2020a, 2022b, 2023a, etc.

At the time of this writing, the latest version of MATLAB deployed for LCLS Development and Production is 2023a.

Individual AFS user accounts in the LCLS Development environment default to set up and use MATLAB 2012a unless overridden.

The default MATLAB versions for shared login accounts in Production are as follows:

Account	Default MATLAB version
physics	2020a
softegr	2020a
laci	2012a

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matlab_2020a_installation
matlab_2020a_installation
2020a

This is 64-bit software.
The Java version used by this Matlab is Java 8.The EPICS Java APIs are located at:

Development
- /afs/slac/g/lcls/package/
epics
- matlab/
java
- 2020a
Production
- /usr/local/lcls/package/
epics
- matlab/
java

At these locations you will be able to find the following libraries:

epicsCoreJava
Includes EPICS 7 (pvaccess, ntypes, pvdata) and JCA libraries
pvaClientJava
Includes pvaClientJava library developed by Marty Kraimer
phoebus
This repository contains the whole phoebus code (replacement for the CS-Studio backend) but it also contains the new pva client library developed by Kay Kasemir.
exampleJava
Includes a set of examples of client and server code for PVAcess.

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For MATLAB admins (epicsmgr group members) only:

- 2020a
- In production, make sure to copy the licenses folder from other MATLAB version:
  /usr/local/lcls/package/matlab/2020a/licenses

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running_matlab
running_matlab
Running MATLAB

Code Block

language	bash

# Launch in desktop mode:
$ run_matlab.bash -m 2020a -d

# Launch in terminal mode:
$ run_matlab.bash -m 2020a

To use one of the supported versions of MATLAB for development and configuration setup purposes, you need to follow the appropriate setup procedures.

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running_matlab_2020a
running_matlab_2020a
2020a

Development (MATLAB should be run on lcls-dev3 in DEV. Do not run MATLAB instances on login nodes such as centos7.)
Code Block
language bash
$ source
New versions (versions later than 2012a) of MATLAB should be installed in the 3rd-party software package area under the matlab folder:
- Development:
/afs/slac/g/lcls/epics/
package/matlab
- Production: /usr/local/lcls/package/matlab
Inside the matlab directory, versions should be installed in folders that correspond to their MATLAB version, e.g. 2012a, 2019a, 2020a, etc.

At the time of this writing, the latest version of MATLAB deployed for LCLS Development and Production is 2020a.

Individual AFS user accounts in the LCLS Development environment default to set up and use MATLAB 2012a unless overridden.

The default MATLAB versions for shared login accounts in Production are as follows:

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This is 32-bit software and will no longer be supported with OS versions later than RHEL6.
The Java version used by this Matlab is Java 6.

Development Environment

setup/epicsenv-7.0.3.1-1.0.bash
$ source /afs/slac/g/lcls/tools/oracle/oracleSetup-R11.2.0.4.bash
$ export MATLAB_VER=2020a
$ export MLM_LICENSE_FILE="27010@license701,27010@license702,27010@license703"
$ source /afs/slac/g/lcls/tools/matlab/setup/matlabSetup64.bash

# Launch in desktop mode: 
$ matlab &
$ /afs/slac/g/lcls/package/matlab

/2012a

Production Environment
- /usr/local/matlab/2012a

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/2020a/bin/matlab &		# If "matlab &" couldn't find the correct location, use the absolute path
$ run_matlab.bash -m 2020a -d

# Launch in terminal mode: 
$ run_matlab.bash -m 2020a

Production (Run on softegr@lcls-srv01 or physics@lcls-ssrv01 in PROD. Do not run MATLAB instances on mcclogin.)

Code Block

language	bash

$ source /usr/local/lcls/epics/epicsenv-7.0.3.1-1.0.bash
$ source /usr/local/lcls/tools/oracle/oracleSetup-R11.2.0.4.bash
$ export MATLAB_VER=2020a 
$ source

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This is 64-bit software.
The Java version used by this Matlab is Java 8.

Development
/afs/slac/g/lcls/package/matlab/2019a
Production
/usr/local/lcls/
package
tools/matlab
/2019a

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This is 64-bit software.
The Java version used by this Matlab is Java 8.

Development
/afs/slac/g/lcls/package/matlab/2020a

Production
/

/setup/matlabSetup64.bash

# Launch in desktop mode: 
$ matlab &
$ /usr/local/lcls/package/matlab/2020a

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This is 64-bit software.
The Java version used by this Matlab is Java 8.

Development
/afs/slac/g/lcls/package/matlab/2022b
Production
/usr/local/lcls/package/matlab/2022b

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In order to set up your environment to use one of the supported versions of MATLAB, follow one of the appropriate procedures below.

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Development

Warning
Do not run MATLAB instances on mcclogin or lcls-prod02. MATLAB should be run on mcc-simul in DEV.

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language	bash

...

/bin/matlab &		# If "matlab &" couldn't find the correct location, use the absolute path
$ run_matlab.bash -m 2020a -d

# Launch in terminal mode:
$ run_matlab.bash -m 2020a

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configuring_matlab
configuring_matlab
Configuring MATLAB

For the Development and Production environments, a set of working configuration files is already provided for users and invoked upon login. Users can override the usage of these files by having their own custom files in the folder where they launch MATLAB (see: Creating A Custom MATLAB Environment).

MATLAB is non-standard Unix software and does not adhere to values set by PATH, LD_LIBRARY_PATH, CLASSPATH, and other global environment variables that are used by most other Unix software. Instead, MATLAB uses the following configuration files to set its environment:

Parameters for the Java JVM that runs inside of MATLAB are configured via a java.opts file
The classpath is configured via a classpath.txt file
The library search path is configured via a librarypath.txt file

For questions on the installation and deployment of MATLAB in Development or Production, please contact:

Kuktae Kim (TID-ACS)
Pascual, Patrick James (EED Systems Group)

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matlab_jvm
matlab_jvm
java.opts

Description: This file is used to pass variables and configurations to the Java JVM used by MATLAB.
Location:
<matlabroot>/bin/<architecture>/java.opts
e.g., in Development environment: /afs/slac/g/lcls/

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package/matlab/

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2019a/bin/glnxa64/java.opts

Below are the working java.opts files for Development and Production.

2020a

Development

Code Block

language	text

-Xbootclasspath/p:/afs/slac/g/lcls

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Production

Code Block

language	bash

$ source /usr/local/lcls/tools/script/ENVS.bash

# Launch in desktop mode: 
$ matlab &

# Launch in terminal mode:
$ run_matlab.bash --matlab=2012a

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Development

Warning
Do not run MATLAB instances on mcclogin or lcls-prod02. MATLAB should be run on mcc-simul in DEV.

Code Block

language	bash

$ source /afs/slac/g/lcls/epics/setup/epicsenv-7.0.3.1-1.0.bash
$ source /afs/slac/g/lcls/tools/oracle/oracleSetup-R11.2.0.4.bash
$ export MATLAB_VER=2019a
$ export MLM_LICENSE_FILE="27010@license701,27010@license702,27010@license703"
$ source /afs/slac/g/lcls/tools/matlab/setup/matlabSetup64.bash

# Launch in desktop mode: 
$ matlab &
$ /afs/slac/g/lcls/package/matlab/2019a/bin/matlab &		# If "matlab &" couldn't find the correct location, use the absolute path

# Launch in terminal mode: 
$ run_matlab.bash --matlab=2019a

Production

Code Block

language	bash

$ source /usr/local/lcls/epics/setup/epicsenv-7.0.3.1-1.0.bash
$ source /usr/local/lcls/tools/oracle/oracleSetup-R11.2.0.4.bash
$ export MATLAB_VER=2019a 
$ source /usr/local/lcls/tools/matlab/setup/matlabSetup64.bash

# Launch in desktop mode: 
$ matlab &
$ /usr/local/lcls/package/matlab/2019a/bin/matlab &		# If "matlab &" couldn't find the correct location, use the absolute path

# Launch in terminal mode: 
$ run_matlab.bash --matlab=2019a

...

Development

Warning
Do not run MATLAB instances on mcclogin or lcls-prod02. MATLAB should be run on mcc-simul in DEV.

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language	bash

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/package/iona/orbacus/prod/JOB/lib/OB.jar
-DAIDA_NAMESERVER_IOR_URL=http://mccas0.slac.stanford.edu/aida/NameServerPROD.ior
-DOOC_COSEVENTCONFIG_PATHNAME=/afs/slac/g/lcls/package/err/common/script/ooc_CosEvent_server.conf
-DAIDA_CLIENT_TIMEOUT=90
-Dgov.aps.jca.jni.JNIContext.jca.use_env=true
-Djca.use_env=true
-DEPICS_PVA_SERVER_PORT=5075
-DEPICS_PVA_BROADCAST_PORT=5076
-DEPICS_PVA_AUTO_ADDR_LIST=FALSE
-DEPICS_PVA_ADDR_LIST=134.79.219.255 lcls-dev1.slac.stanford.edu mcc-simul.slac.stanford.edu

Production

Code Block

language	text

-Xbootclasspath/p:/usr/local/lcls/package/iona/orbacus/prod/JOB/lib/OB.jar
-DAIDA_NAMESERVER_IOR_URL=http://mccas0.slac.stanford.edu/aida/NameServerPROD.ior
-DOOC_COSEVENTCONFIG_PATHNAME=/u1/lcls/tools/orbacus/ooc_CosEvent_server.conf
-DAIDA_CLIENT_TIMEOUT=90
-Dgov.aps.jca.jni.JNIContext.jca.use_env=true
-Djca.use_env=true
-DEPICS_PVA_SERVER_PORT=5075
-DEPICS_PVA_BROADCAST_PORT=5076
-DEPICS_PVA_AUTO_ADDR_LIST=FALSE
-DEPICS_PVA_ADDR_LIST=172.27.3.255 172.27.131.255 172.27.43.255 172.21.40.63 mcc-dmz mccas0.slac.stanford.edu

Anchor
matlab_classpath
matlab_classpath
classpath.txt

Description: This file is used to augment the Java classpath used by MATLAB.
Location:
<matlabroot>/toolbox/local/classpath.txt
e.g., in Development environment: /afs/slac/g/lcls/package/matlab/2019a/toolbox/local/classpath.txt

Below are the working changes to the default MATLAB classpath.txt files for Development and Production.

Note
The lines listed for each file below must be APPENDED to the end of the existing default MATLAB classpath.txt file for the configuration to work. Do not remove the preceding lines in the default MATLAB classpath.txt file.

2020a

Development

Code Block

language	text

# Additions to classpath.txt
# ****************************************************************************************************************
# EPICS 7 Java Interface
# ****************************************************************************************************************
/afs/slac/g/lcls/epics/java/

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epicsCoreJava/

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R7.0.

...

8-1.0.

...

0/products/epics-pvaccess-5.1.7.jar
/afs/slac/g/lcls/epics/java/

...

epicsCoreJava/R7.0.8-1.0.0/products/epics-pvdata-6.1.7.jar
/afs/slac/g/lcls/

...

epics/

...

java/

...

Production

Code Block

language	bash

$ source /usr/local/lcls/epics/epicsenv-7.0.3.1-1.0.bash
$ source /usr/local/lcls/tools/oracle/oracleSetup-R11.2.0.4.bash
$ export MATLAB_VER=2020a 
$ source /usr/local/lcls/tools/matlab/setup/matlabSetup64.bash

# Launch in desktop mode: 
$ matlab &
$ /usr/local/lcls/package/matlab/2020a/bin/matlab &		# If "matlab &" couldn't find the correct location, use the absolute path

# Launch in terminal mode: 
$ run_matlab.bash --matlab=2020a

...

Development

Warning
Do not run MATLAB instances on mcclogin or lcls-prod02. MATLAB should be run on aird-b50-srv01 in DEV.

Code Block

language	bash

$ source /afs/slac/g/lcls/epics/setup/epicsenv-7.0.3.1-1.0.bash
$ source /afs/slac/g/lcls/tools/oracle/oracleSetup-R11.2.0.4.bash
$ export MATLAB_VER=2022b
$ export MLM_LICENSE_FILE="27010@license701,27010@license702,27010@license703"
$ source /afs/slac/g/lcls/tools/matlab/setup/matlabSetup64.bash

# Launch in desktop mode:
$ LD_PRELOAD=${FACILITY_ROOT}/epics/base/R7.0.3.1-1.0/lib/rhel7-x86_64/libCom.so matlab &
$ LD_PRELOAD=${FACILITY_ROOT}/epics/base/R7.0.3.1-1.0/lib/rhel7-x86_64/libCom.so /afs/slac/g/lcls/package/matlab/2022b/bin/matlab &		# If "matlab &" couldn't find the correct location, use the absolute path

# Launch in terminal mode: 
$ run_matlab.bash --matlab=2022b

Production (Run on softegr@lcls-srv04 in PROD)

Code Block

language	bash

$ source /usr/local/lcls/epics/epicsenv-7.0.3.1-1.0.bash
$ source /usr/local/lcls/tools/oracle/oracleSetup-R11.2.0.4.bash
$ export MATLAB_VER=2022b 
$ source /usr/local/lcls/tools/matlab/setup/matlabSetup64.bash

# Launch in desktop mode: 
$ LD_PRELOAD=${FACILITY_ROOT}/epics/base/R7.0.3.1-1.0/lib/rhel7-x86_64/libCom.so matlab &
$ LD_PRELOAD=${FACILITY_ROOT}/epics/base/R7.0.3.1-1.0/lib/rhel7-x86_64/libCom.so /usr/local/lcls/package/matlab/2022b/bin/matlab &		# If "matlab &" couldn't find the correct location, use the absolute path

# Launch in terminal mode: 
$ run_matlab.bash --matlab=2022b

...

For questions on the installation and deployment of MATLAB in Development or Production, please contact:

Slepicka, Hugo Henrique (TID-ACS)
Pascual, Patrick James (EED Systems Group)

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Description: This file is used to pass variables and configurations to the Java JVM used by MATLAB.
Location:
<matlabroot>/bin/<architecture>/java.opts
e.g., in Development environment: /afs/slac/g/lcls/package/matlab/2019a/bin/glnxa64/java.opts

Below are the working java.opts files for Development and Production.

2012a

Development

Code Block

language	text

-Xbootclasspath/p:/epicsCoreJava/R7.0.8-1.0.0/products/epics-ntypes-0.3.7.jar
/afs/slac/g/lcls/epics/java/epicsCoreJava/R7.0.8-1.0.0/products/epics-util-1.0.5.jar
/afs/slac/g/lcls/epics/java/epicsCoreJava/R7.0.8-1.0.0/products/jca-2.4.2.jar
/afs/slac/g/lcls/epics/java/pvaClientJava/R4.3.2-0.0.2/products/epics-pvaclient-4.3.2.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# Oracle Database connectivity
# ****************************************************************************************************************
/afs/slac/g/lcls/package/oracle/product/11.2.0.4/linux-x86_64/jdbc/lib/ojdbc5.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# IONA ORBacus ==> CORBA-based Client Server API
# ****************************************************************************************************************
/afs/slac/g/lcls/package/iona/orbacus/prod/JOB/lib/OB.jar
/afs/slac/g/lcls/package/iona/orbacus/prod/JOB/lib/OBEvent.jar
/afs/slac/g/lcls/package/iona/orbacus/prod/JOB/lib/OBUtil.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# AIDA Interface
# ****************************************************************************************************************
/afs/slac/g/lcls/physics/package/aida/lib/aida.jar
/afs/slac/g/lcls/physics/package/aida/lib/aidadp.jar
/afs/slac/g/lcls/physics/package/err/lib/err.jar
/afs/slac/g/lcls/package/iona/orbacus/prod/JOB/except/lib/OB.jar
-DAIDA_NAMESERVER_IOR_URL=http://mccas0.slac.stanford.edu/aida/NameServerPROD.ior
-DOOC_COSEVENTCONFIG_PATHNAME=/afs/slac/g/lcls/package/err/common/script/ooc_CosEvent_server.conf
-DAIDA_CLIENT_TIMEOUT=90
-DEPICS_PVA_SERVER_PORT=5075
-DEPICS_PVA_BROADCAST_PORT=5076
-DEPICS_PVA_AUTO_ADDR_LIST=FALSE
-DEPICS_PVA_ADDR_LIST=134.79.219.255 lcls-dev1.slac.stanford.edu mcc-simul.slac.stanford.edu
-Dcom.cosylab.epics.caj.CAJContext.addr_list=134.79.219.255 172.26.97.63
-Dcom.cosylab.epics.caj.CAJContext.auto_addr_list=false
-Dcom.cosylab.epics.caj.CAJContext.max_array_bytes=80000000
-Dcom.cosylab.epics.caj.CAJContext.repeater_port=5067
-Dcom.cosylab.epics.caj.CAJContext.server_port=5066

Production

Code Block

language	text

-Xbootclasspath/p:/usr/local/lcls/package/iona/orbacus/prod/JOB/lib/OB.jar
-DAIDA_NAMESERVER_IOR_URL=http://mccas0.slac.stanford.edu/aida/NameServerPROD.ior
-DOOC_COSEVENTCONFIG_PATHNAME=/u1/lcls/tools/orbacus/ooc_CosEvent_server.conf
-DAIDA_CLIENT_TIMEOUT=90
-DEPICS_PVA_SERVER_PORT=5075
-DEPICS_PVA_BROADCAST_PORT=5076
-DEPICS_PVA_AUTO_ADDR_LIST=FALSE
-DEPICS_PVA_ADDR_LIST=172.27.3.255 172.27.131.255 172.27.43.255 172.21.40.63 mcc-dmz mccas0.slac.stanford.edu
-Dcom.cosylab.epics.caj.CAJContext.addr_list=172.27.3.255:5068 mcc-dmz 172.21.40.63:5064 172.27.72.24:5070 172.27.131.255:5068 172.27.43.255:5068
-Dcom.cosylab.epics.caj.CAJContext.auto_addr_list=false
-Dcom.cosylab.epics.caj.CAJContext.max_array_bytes=80000000
-Dcom.cosylab.epics.caj.CAJContext.repeater_port=5069
-Dcom.cosylab.epics.caj.CAJContext.server_port=5068

2019a, 2020a, and 2022b

Development

Code Block

language	text

-Xbootclasspath/p:/afs/slac/g/lcls/package/iona/orbacus/prod/JOB/lib/OB.jar
-DAIDA_NAMESERVER_IOR_URL=http://mccas0.slac.stanford.edu/aida/NameServerPROD.ior
-DOOC_COSEVENTCONFIG_PATHNAME=/afs/slac/g/lcls/package/err/common/script/ooc_CosEvent_server.conf
-DAIDA_CLIENT_TIMEOUT=90
-Dgov.aps.jca.jni.JNIContext.jca.use_env=true
-Djca.use_env=true
-DEPICS_PVA_SERVER_PORT=5075
-DEPICS_PVA_BROADCAST_PORT=5076
-DEPICS_PVA_AUTO_ADDR_LIST=FALSE
-DEPICS_PVA_ADDR_LIST=134.79.219.255 lcls-dev1.slac.stanford.edu mcc-simul.slac.stanford.edu

Production

Code Block

language	text

-Xbootclasspath/p:/usr/local/lcls/package/iona/orbacus/prod/JOB/lib/OB.jar
-DAIDA_NAMESERVER_IOR_URL=http://mccas0.slac.stanford.edu/aida/NameServerPROD.ior
-DOOC_COSEVENTCONFIG_PATHNAME=/u1/lcls/tools/orbacus/ooc_CosEvent_server.conf
-DAIDA_CLIENT_TIMEOUT=90
-Dgov.aps.jca.jni.JNIContext.jca.use_env=true
-Djca.use_env=true
-DEPICS_PVA_SERVER_PORT=5075
-DEPICS_PVA_BROADCAST_PORT=5076
-DEPICS_PVA_AUTO_ADDR_LIST=FALSE
-DEPICS_PVA_ADDR_LIST=172.27.3.255 172.27.131.255 172.27.43.255 172.21.40.63 mcc-dmz mccas0.slac.stanford.edu

...

except.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# SLAC Java APIs
# ****************************************************************************************************************
/afs/slac/g/lcls/physics/release/hlaExtensions/hlaExtensions-R2-0-0/jar/hlaExtensions.jar
/afs/slac/g/lcls/physics/release/xal4lcls/xal4lcls-R1-0-0/build/jar/ext.jar
/afs/slac/g/lcls/physics/release/xal4lcls/xal4lcls-R1-0-0/build/jar/xal.jar
/afs/slac/g/lcls/physics/release/hlaCommon/hlaCommon-R2-0-0/jar/hlaCommon.jar
/afs/slac/g/lcls/epics/extensions/R0.5.0/lib/rhel6-x86_64
/afs/slac/g/lcls/physics/release/MessageLogAPI/MessageLogAPI-R1-0-0/jar/MessageLogAPI.jar
# ****************************************************************************************************************

Production

Code Block

language	text

# Additions to classpath.txt
# ****************************************************************************************************************
# EPICS 7 Java Interface
# ****************************************************************************************************************
/usr/local/lcls/epics/java/epicsCoreJava/R7.0.2-1.0.0/products/epics-pvdata-6.1.2.jar
/usr/local/lcls/epics/java/epicsCoreJava/R7.0.2-1.0.0/products/epics-pvaccess-5.1.2.jar
/usr/local/lcls/epics/java/epicsCoreJava/R7.0.2-1.0.0/products/epics-ntypes-0.3.2.jar
/usr/local/lcls/epics/java/epicsCoreJava/R7.0.2-1.0.0/products/epics-util-1.0.0.jar
/usr/local/lcls/epics/java/epicsCoreJava/R7.0.2-1.0.0/products/jca-2.4.2.jar
#/usr/local/lcls/epics/extensions/R0.5.0/javalib/jca.jar
/usr/local/lcls/epics/java/pvaClientJava/R4.3.2-0.0.1/products/epics-pvaclient-4.3.2.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# Oracle Database connectivity
# ****************************************************************************************************************
/usr/local/lcls/package/oracle/product/11.2.0.4/linux-x86_64/jdbc/lib/ojdbc5.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# IONA ORBacus ==> CORBA-based Client Server API
# ****************************************************************************************************************
/usr/local/lcls/package/iona/orbacus/prod/JOB/lib/OB.jar
/usr/local/lcls/package/iona/orbacus/prod/JOB/lib/OBEvent.jar

...

Description: This file is used to augment the Java classpath used by MATLAB.
Location:
<matlabroot>/toolbox/local/classpath.txt
e.g., in Development environment: /afs/slac/g/lcls/package/matlab/2019a/toolbox/local/classpath.txt

Below are the working changes to the default MATLAB classpath.txt files for Development and Production.

Note
The lines listed for each file below must be APPENDED to the end of the existing default MATLAB classpath.txt file for the configuration to work. Do not remove the preceding lines in the default MATLAB classpath.txt file.

2012a

Development

Code Block

language	text

# Additions to classpath.txt
/afs/slac/g/lcls/package/oracle/product/11.1.0.6/client/jdbc/lib/ojdbc5.jar
/afs/slac/g/lcls/package/iona/orbacus/prod/JOB/lib/OB.jar
/afs/slac/g/lcls/package/iona/orbacus/prod/JOB/lib/OBEvent.jar
/afs/slac/g/lcls/package/iona/orbacus/prod/JOB/lib/OBUtil.jar
/afs/slac/g/lcls/physics/package/except/lib/except.jar
/afs/slac/g/lcls/physics/package/err/lib/err.jar
/afs/slac/g/lcls/physics/package/aida/lib/aida.jar
/afs/slac/g/lcls/physics/release/hlaExtensions/hlaExtensions-R1-2-13/jar/hlaExtensions.jar
/afs/slac/g/lcls/physics/release/xal4lcls-R0-8-4A/build/jar/ext.jar
/afs/slac/g/lcls/physics/release/xal4lcls-R0-8-4A/build/jar/xal.jar
/afs/slac/g/lcls/physics/release/hlaCommon/hlaCommon-R1-0-16/jar/hlaCommon.jar
/afs/slac/g/lcls/epics/extensions/extensions-R3-14-12/lib/linux-x86
#/usr/local/facet/tools/matlab/sdds/java/SDDS.jar
/afs/slac/g/lcls/physics/release/MessageLogAPI-R0-0-1A/jar/MessageLogAPI.jar
# integration with EPICSv4 (greg)
# Note that the following MUST be compiled so as to target a Java 6 compiler at most,
# since matlab 2012b of LCLS is shipped with Java 6. pvAccess as shipped requires Java 7.
# But we use a special source version, adapted by Matej to compile under java 6.
/afs/slac/g/lcls/epics/base/base-java6-R4-4-0/easyPVAJava-0.4.3.jar
/afs/slac/g/lcls/epics/base/base-java6-R4-4-0/pvAccessJava-4.2.0-Java6-SNAPSHOT.jar
/afs/slac/g/lcls/epics/base/base-java6-R4-4-0/pvDataJava-4.0.2.jar

Production

Code Block

language	text

# Additions to classpath.txt
/usr/local/lcls/package/oracleiona/product/11.1.0.6/client/jdbc/lib/ojdbc5.jar
/usr/local/lcls/package/iona/orbacus/prod/JOB/lib/OB.jar
/usr/local/lcls/package/iona/orbacus/orbacus/prod/JOB/lib/OBEvent.jar
/usr/local/lcls/package/iona/orbacus/prod/JOB/lib/OBUtil.jar
/usr/local/lcls/physics/package/except/lib/except.jar
/usr/local/lcls/physics/package/err/lib/err.jar
/usr/local/lcls/physics/package/aida/lib/aida.jar
/usr/local/lcls/physics/release/hlaExtensions/hlaExtensions-R1-2-13/jar/hlaExtensions.jar
/usr/local/lcls/physics/release/xal4lcls-R0-8-4A/build/jar/ext.jar
/usr/local/lcls/physics/release/xal4lcls-R0-8-4A/build/jar/xal.jar
/usr/local/lcls/physics/release/hlaCommon/hlaCommon-R1-0-16/jar/hlaCommon.jar
/usr/local/lcls/epics/extensions/extensions-R3-14-12/lib/linux-x86
/usr/local/facet/tools/matlab/sdds/java/SDDSOBUtil.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# AIDA Interface
# ****************************************************************************************************************
/usr/local/lcls/physics/package/aida/lib/aida.jar
/usr/local/lcls/physics/package/aida/lib/aidadp.jar
/usr/local/lcls/physics/release/MessageLogAPI-R0-0-1A/jar/MessageLogAPI.jar
# integration with EPICSv4 (greg)
# Note that the following MUST be compiled so as to target a Java 6 compiler at most,
# since matlab 2012b of LCLS is shipped with Java 6. pvAccess as shipped requires Java 7.
# But we use a special source version, adapted by Matej to compile under java 6.
/usr/local/lcls/epics/base/base-java6-R4-4-0/easyPVAJava-0.4.3.jar
/usr/local/lcls/epics/base/base-java6-R4-4-0/pvAccessJava-4.2.0-Java6-SNAPSHOT.jar
/usr/local/lcls/epics/base/base-java6-R4-4-0/pvDataJava-4.0.2.jar

2019a and 2020a

Development

Code Block

language	text

# Additions to classpath.txt
# package/err/lib/err.jar
/usr/local/lcls/package/except/lib/except.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# SLAC Java APIs
# *********************************************************
# EPICS 7 Java Interface
# ****************************************************************************************************************
/afsusr/slaclocal/g/lcls/epicsphysics/javarelease/epicsCoreJava/R7.0.8-1.0.0/products/epics-pvaccess-5.1.7.jar
/afs/slac/g/lcls/epics/java/epicsCoreJava/R7.0.8-1.0.0/products/epics-pvdata-6.1.7.jar
/afs/slac/g/lcls/epics/java/epicsCoreJava/R7.0.8-1.0.0/products/epics-ntypes-0.3.7.jar
/afs/slac/g/lcls/epics/java/epicsCoreJava/R7.0.8-1.0.0/products/epics-util-1.0.5.jar
hlaExtensions/hlaExtensions-R2-0-0/jar/hlaExtensions.jar
/usr/local/lcls/physics/release/xal4lcls/xal4lcls-R1-0-0/build/jar/ext.jar
/usr/local/lcls/physics/release/xal4lcls/xal4lcls-R1-0-0/build/jar/xal.jar
/usr/local/lcls/physics/release/hlaCommon/hlaCommon-R2-0-0/jar/hlaCommon.jar
/usr/local/lcls/epics/extensions/R0.5.0/lib/rhel6-x86_64
#/afs/slac/g/lcls/epics/javaextensions/epicsCoreJavalabca/R7R3.8.1-0.8-1.0.0/productslib/jca-2.4.2rhel7-x86_64
/usr/local/facet/tools/matlab/sdds/java/SDDS.jar
/afsusr/slaclocal/g/lcls/epicsphysics/javarelease/pvaClientJava/R4.3.2MessageLogAPI/MessageLogAPI-R1-0.-0.2/products/epics-pvaclient-4.3.2.jar/MessageLogAPI.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# Oracle Database connectivity
# ****************************************************************************************************************
/afs/slac/g/lcls/package/oracle/product/11.2.0.4/linux-x86_64/jdbc/lib/ojdbc5.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# IONA ORBacus ==> CORBA-based Client Server API
# ****************************************************************************************************************
/afs/slac/g/lcls/package/iona/orbacus/prod/JOB/lib/OB.jar
/afs/slac/g/lcls/package/iona/orbacus/prod/JOB/lib/OBEvent.jar
/afs/slac/g/lcls/package/iona/orbacus/prod/JOB/lib/OBUtil.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# AIDA Interface
# ****************************************************************************************************************
/afs/slac/g/lcls/physics/package/aida/lib/aida.jar
/afs/slac/g/lcls/physics/package/aida/lib/aidadp.jar
/afs/slac/g/lcls/physics/package/err/lib/err.jar
/afs/slac/g/lcls/package/except/lib/except.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# SLAC Java APIs
# ****************************************************************************************************************
/afs/slac/g/lcls/physics/release/hlaExtensions/hlaExtensions-R2-0-0/jar/hlaExtensions.jar
/afs/slac/g/lcls/physics/release/xal4lcls/xal4lcls-R1-0-0/build/jar/ext.jar
/afs/slac/g/lcls/physics/release/xal4lcls/xal4lcls-R1-0-0/build/jar/xal.jar
/afs/slac/g/lcls/physics/release/hlaCommon/hlaCommon-R2-0-0/jar/hlaCommon.jar
/afs/slac/g/lcls/epics/extensions/R0.5.0/lib/rhel6-x86_64
/afs/slac/g/lcls/physics/release/MessageLogAPI/MessageLogAPI-R1-0-0/jar/MessageLogAPI.jar
# ****************************************************************************************************************

Production

Code Block

language	text

# Additions to classpath.txt
# ****************************************************************************************************************
# EPICS 7 Java Interface
# ****************************************************************************************************************
/usr/local/lcls/epics/java/epicsCoreJava/R7.0.2-1.0.0/products/epics-pvdata-6.1.2.jar
/usr/local/lcls/epics/java/epicsCoreJava/R7.0.2-1.0.0/products/epics-pvaccess-5.1.2.jar
/usr/local/lcls/epics/java/epicsCoreJava/R7.0.2-1.0.0/products/epics-ntypes-0.3.2.jar
/usr/local/lcls/epics/java/epicsCoreJava/R7.0.2-1.0.0/products/epics-util-1.0.0.jar
/usr/local/lcls/epics/java/epicsCoreJava/R7.0.2-1.0.0/products/jca-2.4.2.jar
#/usr/local/lcls/epics/extensions/R0.5.0/javalib/jca.jar
/usr/local/lcls/epics/java/pvaClientJava/R4.3.2-0.0.1/products/epics-pvaclient-4.3.2.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# Oracle Database connectivity
# ****************************************************************************************************************
/usr/local/lcls/package/oracle/product/11.2.0.4/linux-x86_64/jdbc/lib/ojdbc5.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# IONA ORBacus ==> CORBA-based Client Server API
# ****************************************************************************************************************
/usr/local/lcls/package/iona/orbacus/prod/JOB/lib/OB.jar
/usr/local/lcls/package/iona/orbacus/prod/JOB/lib/OBEvent.jar
/usr/local/lcls/package/iona/orbacus/prod/JOB/lib/OBUtil.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# AIDA Interface
# ****************************************************************************************************************
/usr/local/lcls/physics/package/aida/lib/aida.jar
/usr/local/lcls/physics/package/aida/lib/aidadp.jar
/usr/local/lcls/physics/package/err/lib/err.jar
/usr/local/lcls/package/except/lib/except.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# SLAC Java APIs
# ****************************************************************************************************************
/usr/local/lcls/physics/release/hlaExtensions/hlaExtensions-R2-0-0/jar/hlaExtensions.jar
/usr/local/lcls/physics/release/xal4lcls/xal4lcls-R1-0-0/build/jar/ext.jar
/usr/local/lcls/physics/release/xal4lcls/xal4lcls-R1-0-0/build/jar/xal.jar
/usr/local/lcls/physics/release/hlaCommon/hlaCommon-R2-0-0/jar/hlaCommon.jar
/usr/local/lcls/epics/extensions/R0.5.0/lib/rhel6-x86_64
/afs/slac/g/lcls/epics/extensions/labca/R3.8.1-0.1.0/lib/rhel7-x86_64
/usr/local/facet/tools/matlab/sdds/java/SDDS.jar
/usr/local/lcls/physics/release/MessageLogAPI/MessageLogAPI-R1-0-0/jar/MessageLogAPI.jar
# ****************************************************************************************************************

2022b

Development

Code Block

language	text

# Additions to classpath.txt
# ****************************************************************************************************************
# EPICS 7 Java Interface
# ****************************************************************************************************************
/afs/slac/g/lcls/epics/java/epicsCoreJava/R7.0.8-1.0.0/products/epics-pvaccess-5.1.7.jar
/afs/slac/g/lcls/epics/java/epicsCoreJava/R7.0.8-1.0.0/products/epics-pvdata-6.1.7.jar
/afs/slac/g/lcls/epics/java/epicsCoreJava/R7.0.8-1.0.0/products/epics-ntypes-0.3.7.jar
/afs/slac/g/lcls/epics/java/epicsCoreJava/R7.0.8-1.0.0/products/epics-util-1.0.5.jar
/afs/slac/g/lcls/epics/java/epicsCoreJava/R7.0.8-1.0.0/products/jca-2.4.2.jar
/afs/slac/g/lcls/epics/extensions/R1.3.0/javalib/jca.jar
/afs/slac/g/lcls/epics/java/pvaClientJava/R4.3.2-0.0.2/products/epics-pvaclient-4.3.2.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# Oracle Database connectivity
# ****************************************************************************************************************
/afs/slac/g/lcls/package/oracle/product/11.2.0.4/linux-x86_64/jdbc/lib/ojdbc5.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# IONA ORBacus ==> CORBA-based Client Server API
# ****************************************************************************************************************
/afs/slac/g/lcls/package/iona/orbacus/prod/JOB/lib/OB.jar
/afs/slac/g/lcls/package/iona/orbacus/prod/JOB/lib/OBEvent.jar
/afs/slac/g/lcls/package/iona/orbacus/prod/JOB/lib/OBUtil.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# AIDA Interface
# ****************************************************************************************************************
/afs/slac/g/lcls/physics/package/aida/lib/aida.jar
/afs/slac/g/lcls/physics/package/aida/lib/aidadp.jar
/afs/slac/g/lcls/physics/package/err/lib/err.jar
/afs/slac/g/lcls/package/except/lib/except.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# SLAC Java APIs
# ****************************************************************************************************************
/afs/slac/g/lcls/physics/release/hlaExtensions/hlaExtensions-R2-0-0/jar/hlaExtensions.jar
/afs/slac/g/lcls/physics/release/xal4lcls/xal4lcls-R1-0-0/build/jar/ext.jar
/afs/slac/g/lcls/physics/release/xal4lcls/xal4lcls-R1-0-0/build/jar/xal.jar
/afs/slac/g/lcls/physics/release/hlaCommon/hlaCommon-R2-0-0/jar/hlaCommon.jar
/afs/slac/g/lcls/epics/extensions/R1.3.0/lib/rhel7-x86_64
/afs/slac/g/lcls/physics/release/MessageLogAPI/MessageLogAPI-R1-0-0/jar/MessageLogAPI.jar
# ****************************************************************************************************************

Production

Code Block

language	text

# Additions to classpath.txt
# ****************************************************************************************************************
# EPICS 7 Java Interface
# **************************************************************************************************************** 
/usr/local/lcls/epics/java/epicsCoreJava/R7.0.8-1.0.0/products/epics-pvaccess-5.1.7.jar
/usr/local/lcls/epics/java/epicsCoreJava/R7.0.8-1.0.0/products/epics-pvdata-6.1.7.jar
/usr/local/lcls/epics/java/epicsCoreJava/R7.0.8-1.0.0/products/epics-ntypes-0.3.7.jar
/usr/local/lcls/epics/java/epicsCoreJava/R7.0.8-1.0.0/products/eepics-util-1.0.5.jar
/usr/local/lcls/epics/java/epicsCoreJava/R7.0.8-1.0.0/products/jca-2.4.2.jar
/usr/local/lcls/epics/extensions/R1.3.0/javalib/jca.jar
/usr/local/lcls/epics/java/pvaClientJava/R4.3.2-0.0.1/products/epics-pvaclient-4.3.2.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# Oracle Database connectivity
# ****************************************************************************************************************
/usr/local/lcls/package/oracle/product/11.2.0.4/linux-x86_64/jdbc/lib/ojdbc5.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# IONA ORBacus ==> CORBA-based Client Server API
# ****************************************************************************************************************
/usr/local/lcls/package/iona/orbacus/prod/JOB/lib/OB.jar
/usr/local/lcls/package/iona/orbacus/prod/JOB/lib/OBEvent.jar
/usr/local/lcls/package/iona/orbacus/prod/JOB/lib/OBUtil.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# AIDA Interface
# ****************************************************************************************************************
/usr/local/lcls/physics/package/aida/lib/aida.jar
/usr/local/lcls/physics/package/aida/lib/aidadp.jar
/usr/local/lcls/physics/package/err/lib/err.jar
/usr/local/lcls/package/except/lib/except.jar
# ****************************************************************************************************************
# ****************************************************************************************************************
# SLAC Java APIs
# ****************************************************************************************************************
/usr/local/lcls/physics/release/hlaExtensions/hlaExtensions-R2-0-0/jar/hlaExtensions.jar
/usr/local/lcls/physics/release/xal4lcls/xal4lcls-R1-0-0/build/jar/ext.jar
/usr/local/lcls/physics/release/xal4lcls/xal4lcls-R1-0-0/build/jar/xal.jar
/usr/local/lcls/physics/release/hlaCommon/hlaCommon-R2-0-0/jar/hlaCommon.jar
/usr/local/lcls/epics/extensions/R1.3.0/lib/rhel7-x86_64
/usr/local/facet/tools/matlab/sdds/java/SDDS.jar
/usr/local/lcls/physics/release/MessageLogAPI/MessageLogAPI-R1-0-0/jar/MessageLogAPI.jar
# ****************************************************************************************************************

...

******

Anchor
matlab_librarypath
matlab_librarypath
librarypath.txt

Description: This file is used to augment the library search path used by MATLAB.

Location:
<matlabroot>/toolbox/local/librarypath.txt

e.g., in Development environment: /afs/slac/g/lcls/package/matlab/2019a/toolbox/local/librarypath.txt

Below are the working librarypath.txt files for Development and Production.

Note
The lines listed for each file below must be APPENDED to the end of the existing default MATLAB librarypath.txt file for the configuration to work. Do not remove the preceding lines in the default MATLAB librarypath.txt file.

2020a

...

Description: This file is used to augment the library search path used by MATLAB.

Location:
<matlabroot>/toolbox/local/librarypath.txt

e.g., in Development environment: /afs/slac/g/lcls/package/matlab/2019a/toolbox/local/librarypath.txt

Below are the working librarypath.txt files for Development and Production.

Note
The lines listed for each file below must be APPENDED to the end of the existing default MATLAB librarypath.txt file for the configuration to work. Do not remove the preceding lines in the default MATLAB librarypath.txt file.

2012

Development

Code Block

language	text

/afs/slac/g/lcls/epics/extensions/extensions-R3-14-12/lib/linux-x86
/afs/slac/g/lcls/epics/base/base-R3-14-12/lib/linux-x86

Production

Code Block

language	text

/usr/local/lcls/epics/extensions/extensions-R3-14-12/lib/linux-x86
/usr/local/lcls/epics/base/base-R3-14-12/lib/linux-x86

2019a and 2020a

Development

Code Block

language	text

/afs/slac/g/lcls/epics/extensions/R0.5.0/lib/rhel6-x86_64
/afs/slac/g/lcls/epics/base/R7.0.2-1.0/lib/rhel6-x86_64
/afs/slac/g/lcls/package/oracle/product/11.2.0.4/linux-x86_64/lib

Production

Code Block

language	text

/usr/local/lcls/epics/extensions/R0.5.0/lib/rhel6-x86_64
/usr/local/lcls/epics/base/R7.0.2-1.0/lib/rhel6-x86_64
/usr/local/lcls/package/oracle/product/11.2.0.4/linux-x86_64/lib

...

Development

Code Block

language	text

/afs/slac/g/lcls/epics/extensions/R1R0.35.0/lib/rhel7rhel6-x86_64
/afs/slac/g/lcls/epics/base/R7.0.3.12-1.0/lib/rhel7rhel6-x86_64
/afs/slac/g/lcls/package/oracle/product/11.2.0.4/linux-x86_64/lib

Production

Code Block

language	text

/usr/local/lcls/epics/extensions/R1R0.35.0/lib/rhel7rhel6-x86_64
/usr/local/lcls/epics/base/R7.0.3.12-1.0/lib/rhel7rhel6-x86_64
/usr/local/lcls/package/oracle/product/11.2.0.4/linux-x86_64/lib

...

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EPICS Java APIs

Anchormatlab_2020a_installationmatlab_2020a_installation2020a

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Anchormatlab_jvmmatlab_jvmjava.opts

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2020a

Development

2012a

Development

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2019a, 2020a, and 2022b

Development

Production

Production

2012a

Development

Production

2019a and 2020a

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Production

2022b

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Production

Anchormatlab_librarypathmatlab_librarypathlibrarypath.txt

2020a

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Production

Development

Production

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matlab_top
MATLAB

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matlab_installation
matlab_installation
Installation

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matlab_2020a_installation
matlab_2020a_installation
2020a

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Running MATLAB

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2020a

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configuring_matlab
Configuring MATLAB

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matlab_jvm
java.opts

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matlab_classpath
classpath.txt

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librarypath.txt