(ps-4.5.26) [dubrovin@psanagpu110:~/LCLS/con-lcls2]$ roicon 1 -g /cds/group/psdm/detector/data_test/geometry/geo-epix10ka2m-16-segment.data -i test-2d-mask.npy -t -h
usage:
1) Construct 2-d image (or mask-of-segments) from ndarray with image shapedOR
(ps-4.5.26) [dubrovin@psanagpu110:~/LCLS/con-lcls2]$ roicon 1 -g /sdf/group/lcls/ds/ana/detector/data_test/geometry/geo-epix10ka2m-16-segment.data -i test-2d-mask.npy -t -h
usage:
1) Construct 2-d image (or mask-of-segments) from ndarray with image shaped as data using appropriate geometry file
roicon 1 -g <geometry-file> [-a (input)<ndarray-shaped-as-data-fname>] [-i <image-(output)file>] [-c <control-bitword>]
ex1: roicon 1 -g <geometry-fname>
ex2: roicon 1 -g <geometry-fname> -a <ndarray-shaped-as-data-fname>
test: roicon 1 -g /cds/group/psdm/detector/data_test/geometry/geo-epix10ka2m-16-segment.data -i test-2d-mask.npy -t
2) (TBD) Create ROI mask using mask editor "med" (DO NOT FORGET to save mask in file!)
roicon 2 [-i <image-(input)file>] [-m <roi-mask-(output)file>]
ex1,2: roicon 2
ex3: roicon 2 -i image.npy -m roi-mask.npy
3) Convert ROI mask to ndarray with mask shaped as data
roicon 3 -g <geometry-file> [-m <roi-mask-(input)file>] [-n ndarray-with-mask-(output)-file] [-c <control-bitword>]
ex1,2: roicon 3 -g <geometry-fname>
test: roicon 3 -g /cds/group/psdm/detector/data_test/geometry/geo-epix10ka2m-16-segment.data -m test-2d-mask.npy -n test-3d-mask.npy
Conversion between 2-d and 3-d masks.
positional arguments:
args process number: 1-construct image, 2-run mask editor on image, 3-convert image mask to ndarray; default = 1
optional arguments:
-h, --help show this help message and exit
-g GFNAME, --gfname GFNAME
geometry file name, default = <geometry-fname>
-a AFNAME, --afname AFNAME
input ndarray file name, default = None
-i IFNAME, --ifname IFNAME
image file name, default = mask-img.txt
-m MFNAME, --mfname MFNAME
ROI mask file name, default = mask-roi.txt
-n NFNAME, --nfname NFNAME
ndarray mask file name, default = mask-nda.txt
-c CBITS, --cbits CBITS
mask control bits, =0-none, +1-edges, +2-middle, etc..., default = 65535
-v, --verb verbosity, default = False
-t, --dotest add a couple of rings to the 2-d mask for test purpose, default = False
-F FIGPREFIX, --figprefix FIGPREFIX
figure file name prefix under <dirrepo>/figs, None - do not save, default = fig
-o DIRREPO, --dirrepo DIRREPO
repository for logs and output files, default = ./work-roicon
-L LOGMODE, --logmode LOGMODE
logging mode, one of CRITICAL FATAL ERROR WARN WARNING INFO DEBUG NOTSET TRACE, default = INFO
-k KWARGS, --kwargs KWARGS
str python code evaluated to dict and passed to geo.get_pixel_coord_indexes(**kwargs), default = {}
(ps-4.5.26) [dubrovin@psanagpu110:~/LCLS/con-lcls2]$ | 