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Mask Editor GUI is intended to manually create/edit mask of bad pixels and save it as 2-d image and 3-d array shaped as data.
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Launch Mask Editor
Mask Editor GUI can be launched in lcls2 software release (>ps-4.6.0) by command
masked
with(out) optional parameters as explained in help
masked -h
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ps-4.6.0 [dubrovin@sdflogin002:~/LCLS/con-lcls2/lcls2]$ masked -h
usage: Usage:
masked -a <fname-nda.npy> -k <DataSource-kwargs> -d <detector> -g <fname-geometry.npy> [-L <logging-mode>] [...]
Help:
masked -h
Examples:
masked # set all parameters using GUI
masked -d epix10ka_000001 # takes geometry from detector DB
masked -d epix10ka_000001 -k exp=ueddaq02,run=569 # takes geometry from experiment DB
masked -g /sdf/group/lcls/ds/ana/detector/data2_test/geometry/geo-epix10kaquad-tstx00117.data # takes geometry from file
masked -a /sdf/group/lcls/ds/ana/detector/data2_test/misc/epix10kaquad-meclv2518-0101-CeO2-ave.npy # takes array for image from file
masked -a /sdf/group/lcls/ds/ana/detector/data2_test/misc/epix10kaquad-meclv2518-0101-CeO2-ave.npy -g /sdf/group/lcls/ds/ana/detector/data2_test/geometry/geo-epix10kaquad-tstx00117.data
masked -d epix10ka_000001 -a /sdf/group/lcls/ds/ana/detector/data2_test/misc/epix10kaquad-meclv2518-0101-CeO2-ave.npy
masked -d epix10ka_000001 -k exp=ueddaq02,run=569 -a /sdf/group/lcls/ds/ana/detector/data2_test/misc/epix10kaquad-meclv2518-0101-CeO2-ave.npy
masked - command opens mask editor GUI
positional arguments:
posargs list of positional arguments: [<fname-nda.npy>] [<fname-geometry.txt>], default = []
optional arguments:
-h, --help show this help message and exit
-a NDAFNAME, --ndafname NDAFNAME
image array file name*.nda, default = Select
-d DETNAME, --detname DETNAME
detector name, default = Select
-k DSKWARGS, --dskwargs DSKWARGS
string of comma-separated (no spaces) simple parameters for DataSource(**kwargs), ex: exp=<expname>,run=<runs>,dir=<xtc-dir>, ..., or <fname.xtc> or
files=<fname.xtc> or pythonic dict of generic kwargs, e.g.: "{'exp':'tmoc00318', 'run':[10,11,12], 'dir':'/a/b/c/xtc'}", default = Select
-g GEOFNAME, --geofname GEOFNAME
geometry description constants file name *.txt, *.data, default = Select
-L LOGMODE, --logmode LOGMODE
logging mode, one of CRITICAL, FATAL, ERROR, WARN, WARNING, INFO, DEBUG, NOTSET, default = INFO
-o DIRREPO, --dirrepo DIRREPO
repository for files, default = ./repo-masked
--ctab CTAB color table index in range [1,8], default = 3
--dirmode DIRMODE directory access mode, default = 0o2775
--filemode FILEMODE file access mode, default = 0o664
--group GROUP group ownership for all files, default = ps-users
--savelog On/Off saving log file, default = 1
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Mask Editor GUI main window
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