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- Using 'X Server' on your local (laptop/desktop) machine. (This may be slow)
- You can install XQuartz on mac. You should already be running one on Linux.
- Using FastX
- https://fastx.slac.stanford.edu:3443/
- Launch a session (centos7- or iris- gnome seem to work well), selecting @slac_public_login
- At the terminal, treat it as your 'local' computer, i.e. ssh -Y ... into the sdf server as indicated below
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# log onto the 'login' node of the 'slacgpu' cluster: note to change username. # the -Y enables X forwarding to allow the GUI to display locally on your laptop. ssh -Y <username>@sdf-login01.slac.stanford.edu # by default you will be logged into your 'AFS Home'. Please do NOT use this space for your CryoEM work; there is # insufficient disk space and it is also not very performant. You should use the directory defined above. cd /sdf/group/cryoem/g/<PROPOSAL> # if you're starting a new relion 'project': mkdir my_new_project cd my_new_project # to see what modules are installed module avail # load the modules you plan to use within relion e.g.: module load motioncor2/1.3.2 module load ctffind/4.1.13 # start the relion GUI module load relion/3.01.82 relion # answer Yes at prompt |
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