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To run the system tests from scratch, i.e. runing Gleam to create the full root trees, RootAnalysis to create the histograms and finally a step to set the standard version, threshold and calculate the metadata, do (from the exec directory):
./runSystest.pl <configfile>
Where <configfile> is the name of your configuration file. If you do not supply a config file name, the code will look for a file called Config.txt by default. It is important that only one set of system tests for each package is running at any given time. You can run a set of system tests for EngModel and GlastRelease simultaneously, but you cannot run two sets for different GlastRelease versions. After you start the system tests it is usually a good idea to look at the file test_error (also in the exec directory). We fairly often get a sporadic error when connecting to the Oracle database. If this happens, I usually just kill the jobs with bkill 0 and start them again.