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For the yag, a 1% overlap is 86%:
All Accuracies
36 different runs were carried out, varying each of the following:
- Pre-processing algorithm, one of
- none
- just 'lanczos' reduction
- denoise-log
- 3 pt median filter
- log(1+img)
- 'lanczoz' reduction
- multiply by scale factor
- denoise-max-log
- 3 pt median filter
- 3 x 3 sum
- 3 pt median filter
- 'max_reduce' (save largest pixel value over square)
- 'lanczoz' reduction (to get final (224,224) size)
- log(1+img)
- scale up
- none
- files, one of
- just 1,2
- 1,2,4
- Do and Don't subtract background for file 4
- Do and Don't filter out some of the 8192 features with variance <= 0.01 before doing regression
Below is a table of all these results
| Code Block | ||
|---|---|---|
| ||
nm=yag eb_alg_none_f1_f2-regress.h5 inter/union accuracies: th=0.50 acc=0.41 th=0.20 acc=0.78 th=0.01 acc=0.86
nm=vcc eb_alg_none_f1_f2-regress.h5 inter/union accuracies: th=0.50 acc=0.14 th=0.20 acc=0.38 th=0.01 acc=0.65
nm=yag eb_alg_denoise-log_f1_f2-regress.h5 inter/union accuracies: th=0.50 acc=0.66 th=0.20 acc=0.87 th=0.01 acc=0.90
nm=vcc eb_alg_denoise-log_f1_f2-regress.h5 inter/union accuracies: th=0.50 acc=0.38 th=0.20 acc=0.61 th=0.01 acc=0.72
nm=yag eb_alg_denoise-max-log_f1_f2-regress.h5 inter/union accuracies: th=0.50 acc=0.46 th=0.20 acc=0.77 th=0.01 acc=0.88
nm=vcc eb_alg_denoise-max-log_f1_f2-regress.h5 inter/union accuracies: th=0.50 acc=0.41 th=0.20 acc=0.60 th=0.01 acc=0.76
nm=yag eb_alg_none_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.34 th=0.20 acc=0.68 th=0.01 acc=0.82
nm=vcc eb_alg_none_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.11 th=0.20 acc=0.34 th=0.01 acc=0.61
nm=yag eb_alg_denoise-log_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.47 th=0.20 acc=0.75 th=0.01 acc=0.89
nm=vcc eb_alg_denoise-log_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.26 th=0.20 acc=0.42 th=0.01 acc=0.56
nm=yag eb_alg_denoise-max-log_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.34 th=0.20 acc=0.62 th=0.01 acc=0.81
nm=vcc eb_alg_denoise-max-log_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.28 th=0.20 acc=0.39 th=0.01 acc=0.48
nm=yag eb_subbkg_alg_none_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.38 th=0.20 acc=0.73 th=0.01 acc=0.86
nm=vcc eb_subbkg_alg_none_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.08 th=0.20 acc=0.28 th=0.01 acc=0.55
nm=yag eb_subbkg_alg_denoise-log_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.56 th=0.20 acc=0.81 th=0.01 acc=0.92
nm=vcc eb_subbkg_alg_denoise-log_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.23 th=0.20 acc=0.46 th=0.01 acc=0.65
nm=yag eb_subbkg_alg_denoise-max-log_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.27 th=0.20 acc=0.64 th=0.01 acc=0.84
nm=vcc eb_subbkg_alg_denoise-max-log_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.26 th=0.20 acc=0.48 th=0.01 acc=0.63
nm=yag eb_varthresh_alg_none_f1_f2-regress.h5 inter/union accuracies: th=0.50 acc=0.41 th=0.20 acc=0.79 th=0.01 acc=0.86
nm=vcc eb_varthresh_alg_none_f1_f2-regress.h5 inter/union accuracies: th=0.50 acc=0.10 th=0.20 acc=0.38 th=0.01 acc=0.63
nm=yag eb_varthresh_alg_denoise-log_f1_f2-regress.h5 inter/union accuracies: th=0.50 acc=0.67 th=0.20 acc=0.87 th=0.01 acc=0.90
nm=vcc eb_varthresh_alg_denoise-log_f1_f2-regress.h5 inter/union accuracies: th=0.50 acc=0.37 th=0.20 acc=0.58 th=0.01 acc=0.71
nm=yag eb_varthresh_alg_denoise-max-log_f1_f2-regress.h5 inter/union accuracies: th=0.50 acc=0.45 th=0.20 acc=0.77 th=0.01 acc=0.88
nm=vcc eb_varthresh_alg_denoise-max-log_f1_f2-regress.h5 inter/union accuracies: th=0.50 acc=0.40 th=0.20 acc=0.59 th=0.01 acc=0.76
nm=yag eb_varthresh_alg_none_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.30 th=0.20 acc=0.67 th=0.01 acc=0.82
nm=vcc eb_varthresh_alg_none_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.10 th=0.20 acc=0.33 th=0.01 acc=0.60
nm=yag eb_varthresh_alg_denoise-log_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.47 th=0.20 acc=0.75 th=0.01 acc=0.89
nm=vcc eb_varthresh_alg_denoise-log_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.24 th=0.20 acc=0.42 th=0.01 acc=0.57
nm=yag eb_varthresh_alg_denoise-max-log_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.34 th=0.20 acc=0.62 th=0.01 acc=0.81
nm=vcc eb_varthresh_alg_denoise-max-log_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.28 th=0.20 acc=0.39 th=0.01 acc=0.48
nm=yag eb_varthresh_subbkg_alg_none_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.35 th=0.20 acc=0.72 th=0.01 acc=0.86
nm=vcc eb_varthresh_subbkg_alg_none_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.07 th=0.20 acc=0.25 th=0.01 acc=0.53
nm=yag eb_varthresh_subbkg_alg_denoise-log_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.54 th=0.20 acc=0.79 th=0.01 acc=0.92
nm=vcc eb_varthresh_subbkg_alg_denoise-log_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.22 th=0.20 acc=0.44 th=0.01 acc=0.64
nm=yag eb_varthresh_subbkg_alg_denoise-max-log_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.27 th=0.20 acc=0.65 th=0.01 acc=0.84
nm=vcc eb_varthresh_subbkg_alg_denoise-max-log_f1_f2_f4-regress.h5 inter/union accuracies: th=0.50 acc=0.26 th=0.20 acc=0.47 th=0.01 acc=0.62 |
Best Result - YAG
The best 1% overlap for the YAG is 92%
- It is over files 1,2,4
- used denoise-log, and subtracts the background.
- Same result with/without the variance feature selection
- Not subtracting the background reduced the accuracy to 89%.
- Not using file 4 reduced accuracy to 90%.
- Using the denoise-max-log led to 84% accuracy (worse than no preprocessing = 86%).
Best Result - VCC
dudeResults - no pre-processing
With no preprocessing,