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All instructions given here assume you're using the steering files included with the release. If you write your own, you can point hps-java to it by omitting the "-r" and using the file path of your .lcsim file:
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java -jar hps-distribution.jar -i recon.slcio my_steering_files/MyAnalysis.lcsim -DoutputFile=analysis_plots |
The standard steering files are in trunk/steering-files/src/main/resources/org/hps/steering/.