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Launching this app with -h option gives enough information about its functionality. In this note we demonstrate graphical content of the files generate in examples for this procedure.
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Usage: roicon [options] Examples: 1) Construct 2-d image (or mask-of-segments) from ndarray with image shaped as data using appropriate geometry file roicon -p1 -g <geometry-file> [-a <ndarray-with-image-(input)file>] [-i <image-(output)file>] [-c <control-bitword>] ex1: roicon -p1 -g /reg/d/psdm/CXI/cxitut13/calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/geometry/0-end.data ex2: roicon -p1 -g /reg/d/psdm/CXI/cxitut13/calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/geometry/0-end.data -a /reg/neh/home1/dubrovin/LCLS/CSPadAlignment-v01/calib-cxi-ds1-2014-03-19/cspad-ndarr-ave-cxii0114-r0227.dat ex3: roicon -p1 -g /reg/d/psdm/CXI/cxitut13/calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/geometry/0-end.data -a /reg/neh/home1/dubrovin/LCLS/CSPadAlignment-v01/calib-cxi-ds1-2014-05-15/cspad-arr-cxid2714-r0023-lysozyme-rings.npy -i image.npy 2) Create ROI mask using mask editor "med" (DO NOT FORGET to save mask in file!) roicon -p2 [-i <image-(input)file>] [-m <roi-mask-(output)file>] ex1,2: roicon -p2 exex3: roicon -p2 -i image.npy -m roi-mask.npy 3) Convert ROI mask to ndarray with mask shaped as data roicon -p3 -g <geometry-file> [-m <roi-mask-(input)file>] [-n ndarray-with-mask-(output)-file] [-c <control-bitword>] ex1,2: roicon -p3 -g ex:/reg/d/psdm/CXI/cxitut13/calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/geometry/0-end.data ex3: roicon -p3 -g /reg/d/psdm/CXI/cxitut13/calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/geometry/0-end.data -m roi-mask.npy -n ndarray-mask.npy Optional input parameters. Options: -h, --help show this help message and exit -g GFNAME, --gfname=GFNAME geometry file name, default = /reg/d/psdm/CXI/cxitut13 /calib/CsPad::CalibV1/CxiDs1.0:Cspad.0/geometry/0-end. data -a AFNAME, --afname=AFNAME input ndarray file name, default = None -i IFNAME, --ifname=IFNAME image file name, default = mask-img.txt -m MFNAME, --mfname=MFNAME ROI mask file name, default = mask-roi.txt -n NFNAME, --nfname=NFNAME ndarray mask file name, default = mask-nda.txt -c CBITS, --cbits=CBITS mask control bits, =0-none, +1-edges, +2-middle, etc..., default = 65535 -p PROC, --proc=PROC process number: 1-construct image, 2-run mask editor on image, 3-convert image mask to ndarray; default = 1 -v, --verb verbosity, default = False |
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